Hb_003598_060

Information

Type -
Description -
Location Contig3598: 203485-204217
Sequence    

Annotation

kegg
ID pop:POPTR_0006s25370g
description POPTRDRAFT_763331; hypothetical protein
nr
ID XP_002308596.1
description hypothetical protein POPTR_0006s25370g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HE27
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s25370g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003598_060 0.0 - - hypothetical protein POPTR_0006s25370g [Populus trichocarpa]
2 Hb_002056_040 0.0098937603 - - arsenical pump-driving atpase, putative [Ricinus communis]
3 Hb_000140_020 0.0103620217 - - BnaA02g09930D [Brassica napus]
4 Hb_099335_030 0.0122128593 - - hypothetical protein M569_10107, partial [Genlisea aurea]
5 Hb_003020_320 0.0243177483 - - -
6 Hb_000877_010 0.0272135184 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
7 Hb_001068_060 0.0298508229 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
8 Hb_000032_120 0.0301198394 - - Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [Glycine soja]
9 Hb_099335_020 0.0317842031 - - hypothetical protein ARALYDRAFT_905869 [Arabidopsis lyrata subsp. lyrata]
10 Hb_061183_010 0.0577770029 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
11 Hb_124540_010 0.0651475308 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Populus euphratica]
12 Hb_001946_230 0.0652903349 - - -
13 Hb_010904_020 0.067495046 - - PREDICTED: probable receptor-like protein kinase At5g39030 [Populus euphratica]
14 Hb_000313_160 0.0675014812 - - BnaC02g20570D [Brassica napus]
15 Hb_001543_010 0.0736081511 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000337_020 0.0738795395 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
17 Hb_000189_610 0.0748123155 - - Late embryogenesis abundant protein D-34, putative [Ricinus communis]
18 Hb_001281_030 0.0757533213 - - hypothetical protein POPTR_0010s18450g [Populus trichocarpa]
19 Hb_000864_040 0.0792859496 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_003685_020 0.0842742287 - - PREDICTED: laccase-14-like [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_003598_060 Hb_003598_060 Hb_002056_040 Hb_002056_040 Hb_003598_060--Hb_002056_040 Hb_000140_020 Hb_000140_020 Hb_003598_060--Hb_000140_020 Hb_099335_030 Hb_099335_030 Hb_003598_060--Hb_099335_030 Hb_003020_320 Hb_003020_320 Hb_003598_060--Hb_003020_320 Hb_000877_010 Hb_000877_010 Hb_003598_060--Hb_000877_010 Hb_001068_060 Hb_001068_060 Hb_003598_060--Hb_001068_060 Hb_002056_040--Hb_000140_020 Hb_002056_040--Hb_099335_030 Hb_002056_040--Hb_003020_320 Hb_002056_040--Hb_000877_010 Hb_002056_040--Hb_001068_060 Hb_000140_020--Hb_099335_030 Hb_000140_020--Hb_003020_320 Hb_000140_020--Hb_000877_010 Hb_000140_020--Hb_001068_060 Hb_099335_030--Hb_003020_320 Hb_099335_030--Hb_000877_010 Hb_099335_030--Hb_001068_060 Hb_061183_010 Hb_061183_010 Hb_003020_320--Hb_061183_010 Hb_001946_230 Hb_001946_230 Hb_003020_320--Hb_001946_230 Hb_000877_010--Hb_001068_060 Hb_000032_120 Hb_000032_120 Hb_000877_010--Hb_000032_120 Hb_099335_020 Hb_099335_020 Hb_000877_010--Hb_099335_020 Hb_001068_060--Hb_000032_120 Hb_001068_060--Hb_099335_020 Hb_124540_010 Hb_124540_010 Hb_001068_060--Hb_124540_010 Hb_010904_020 Hb_010904_020 Hb_001068_060--Hb_010904_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.162919 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.18407

CAGE analysis