Hb_003020_320

Information

Type -
Description -
Location Contig3020: 199207-200050
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31877: 200249-200820 , PASA_asmbl_31880: 201013-201951
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_320 0.0 - - -
2 Hb_099335_030 0.0121061552 - - hypothetical protein M569_10107, partial [Genlisea aurea]
3 Hb_000140_020 0.0139569646 - - BnaA02g09930D [Brassica napus]
4 Hb_002056_040 0.0144252095 - - arsenical pump-driving atpase, putative [Ricinus communis]
5 Hb_003598_060 0.0243177483 - - hypothetical protein POPTR_0006s25370g [Populus trichocarpa]
6 Hb_061183_010 0.0334760745 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
7 Hb_001946_230 0.0409959336 - - -
8 Hb_000313_160 0.0432091969 - - BnaC02g20570D [Brassica napus]
9 Hb_000337_020 0.0495938657 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
10 Hb_001281_030 0.0514697326 - - hypothetical protein POPTR_0010s18450g [Populus trichocarpa]
11 Hb_000877_010 0.0515193685 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
12 Hb_001068_060 0.0541548587 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
13 Hb_000032_120 0.0544236837 - - Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [Glycine soja]
14 Hb_099335_020 0.0560868351 - - hypothetical protein ARALYDRAFT_905869 [Arabidopsis lyrata subsp. lyrata]
15 Hb_003685_020 0.0600009496 - - PREDICTED: laccase-14-like [Fragaria vesca subsp. vesca]
16 Hb_034168_020 0.0629666746 - - putative uncharacterized protein (mitochondrion) [Hevea brasiliensis]
17 Hb_118410_020 0.0679674214 - - PREDICTED: UDP-glycosyltransferase 76C4 [Vitis vinifera]
18 Hb_001736_010 0.0822385117 - - ring finger protein, putative [Ricinus communis]
19 Hb_124540_010 0.0894160963 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Populus euphratica]
20 Hb_010904_020 0.0917605137 - - PREDICTED: probable receptor-like protein kinase At5g39030 [Populus euphratica]

Gene co-expression network

sample Hb_003020_320 Hb_003020_320 Hb_099335_030 Hb_099335_030 Hb_003020_320--Hb_099335_030 Hb_000140_020 Hb_000140_020 Hb_003020_320--Hb_000140_020 Hb_002056_040 Hb_002056_040 Hb_003020_320--Hb_002056_040 Hb_003598_060 Hb_003598_060 Hb_003020_320--Hb_003598_060 Hb_061183_010 Hb_061183_010 Hb_003020_320--Hb_061183_010 Hb_001946_230 Hb_001946_230 Hb_003020_320--Hb_001946_230 Hb_099335_030--Hb_000140_020 Hb_099335_030--Hb_002056_040 Hb_099335_030--Hb_003598_060 Hb_000877_010 Hb_000877_010 Hb_099335_030--Hb_000877_010 Hb_001068_060 Hb_001068_060 Hb_099335_030--Hb_001068_060 Hb_000140_020--Hb_002056_040 Hb_000140_020--Hb_003598_060 Hb_000140_020--Hb_000877_010 Hb_000140_020--Hb_001068_060 Hb_002056_040--Hb_003598_060 Hb_002056_040--Hb_000877_010 Hb_002056_040--Hb_001068_060 Hb_003598_060--Hb_000877_010 Hb_003598_060--Hb_001068_060 Hb_061183_010--Hb_001946_230 Hb_000313_160 Hb_000313_160 Hb_061183_010--Hb_000313_160 Hb_000337_020 Hb_000337_020 Hb_061183_010--Hb_000337_020 Hb_001281_030 Hb_001281_030 Hb_061183_010--Hb_001281_030 Hb_003685_020 Hb_003685_020 Hb_061183_010--Hb_003685_020 Hb_034168_020 Hb_034168_020 Hb_061183_010--Hb_034168_020 Hb_001946_230--Hb_000313_160 Hb_001946_230--Hb_000337_020 Hb_001946_230--Hb_001281_030 Hb_001946_230--Hb_003685_020 Hb_001946_230--Hb_034168_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.966338 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.22487

CAGE analysis