Hb_003428_020

Information

Type -
Description -
Location Contig3428: 17155-17557
Sequence    

Annotation

kegg
ID tcc:TCM_047030
description Plant protein 1589 of Uncharacterized protein function
nr
ID XP_011045292.1
description PREDICTED: uncharacterized protein LOC105140247 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A061EC00
description Plant protein 1589 of Uncharacterized protein function OS=Theobroma cacao GN=TCM_047030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35786: 17546-17865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003428_020 0.0 - - PREDICTED: uncharacterized protein LOC105140247 [Populus euphratica]
2 Hb_000037_210 0.0026085006 - - -
3 Hb_009083_060 0.0034595528 - - PREDICTED: uncharacterized protein LOC103344557 [Prunus mume]
4 Hb_007676_090 0.0043933437 - - PREDICTED: uncharacterized protein LOC105644038 [Jatropha curcas]
5 Hb_000186_020 0.034565044 - - PREDICTED: uncharacterized protein LOC104901327 [Beta vulgaris subsp. vulgaris]
6 Hb_000084_270 0.0417414119 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
7 Hb_099509_010 0.0613667355 - - PREDICTED: vacuolar iron transporter 1-like isoform X2 [Jatropha curcas]
8 Hb_014870_010 0.0643188737 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
9 Hb_000103_170 0.0795039107 - - uncharacterized protein LOC100501254 [Zea mays]
10 Hb_006277_090 0.0868223897 - - PREDICTED: uncharacterized protein LOC105649700 [Jatropha curcas]
11 Hb_002571_110 0.0912260966 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
12 Hb_001935_050 0.1000964293 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
13 Hb_002701_100 0.1039356158 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
14 Hb_000016_140 0.1180932863 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
15 Hb_000864_040 0.1189190919 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000032_130 0.1197001158 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 12 [Jatropha curcas]
17 Hb_001085_280 0.1197747737 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
18 Hb_000189_610 0.1233770227 - - Late embryogenesis abundant protein D-34, putative [Ricinus communis]
19 Hb_001543_010 0.1245764856 - - conserved hypothetical protein [Ricinus communis]
20 Hb_097104_010 0.127390553 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase

Gene co-expression network

sample Hb_003428_020 Hb_003428_020 Hb_000037_210 Hb_000037_210 Hb_003428_020--Hb_000037_210 Hb_009083_060 Hb_009083_060 Hb_003428_020--Hb_009083_060 Hb_007676_090 Hb_007676_090 Hb_003428_020--Hb_007676_090 Hb_000186_020 Hb_000186_020 Hb_003428_020--Hb_000186_020 Hb_000084_270 Hb_000084_270 Hb_003428_020--Hb_000084_270 Hb_099509_010 Hb_099509_010 Hb_003428_020--Hb_099509_010 Hb_000037_210--Hb_009083_060 Hb_000037_210--Hb_007676_090 Hb_000037_210--Hb_000186_020 Hb_000037_210--Hb_000084_270 Hb_000037_210--Hb_099509_010 Hb_009083_060--Hb_007676_090 Hb_009083_060--Hb_000186_020 Hb_009083_060--Hb_000084_270 Hb_009083_060--Hb_099509_010 Hb_007676_090--Hb_000186_020 Hb_007676_090--Hb_000084_270 Hb_014870_010 Hb_014870_010 Hb_007676_090--Hb_014870_010 Hb_000186_020--Hb_000084_270 Hb_000186_020--Hb_014870_010 Hb_000084_270--Hb_014870_010 Hb_000103_170 Hb_000103_170 Hb_099509_010--Hb_000103_170 Hb_006277_090 Hb_006277_090 Hb_099509_010--Hb_006277_090 Hb_000032_130 Hb_000032_130 Hb_099509_010--Hb_000032_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.43997 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.05741

CAGE analysis