Hb_000103_170

Information

Type -
Description -
Location Contig103: 134670-139063
Sequence    

Annotation

kegg
ID zma:100501254
description uncharacterized LOC100501254
nr
ID NP_001182952.1
description uncharacterized protein LOC100501254 [Zea mays]
swissprot
ID -
description -
trembl
ID C4J253
description Uncharacterized protein OS=Zea mays PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01192: 136557-136807 , PASA_asmbl_01193: 137200-137501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_170 0.0 - - uncharacterized protein LOC100501254 [Zea mays]
2 Hb_006277_090 0.0073485167 - - PREDICTED: uncharacterized protein LOC105649700 [Jatropha curcas]
3 Hb_099509_010 0.0181878069 - - PREDICTED: vacuolar iron transporter 1-like isoform X2 [Jatropha curcas]
4 Hb_000032_130 0.0404356745 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 12 [Jatropha curcas]
5 Hb_097104_010 0.0481940258 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
6 Hb_009083_060 0.0760553747 - - PREDICTED: uncharacterized protein LOC103344557 [Prunus mume]
7 Hb_000037_210 0.0769037998 - - -
8 Hb_003428_020 0.0795039107 - - PREDICTED: uncharacterized protein LOC105140247 [Populus euphratica]
9 Hb_007676_090 0.0838819837 - - PREDICTED: uncharacterized protein LOC105644038 [Jatropha curcas]
10 Hb_002701_100 0.1032007811 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
11 Hb_000186_020 0.1139120174 - - PREDICTED: uncharacterized protein LOC104901327 [Beta vulgaris subsp. vulgaris]
12 Hb_003729_050 0.1142830787 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
13 Hb_000084_270 0.1210457349 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
14 Hb_005253_050 0.1249445428 - - Isoflavone reductase, putative [Ricinus communis]
15 Hb_006355_100 0.1272773198 - - hypothetical protein glysoja_002455 [Glycine soja]
16 Hb_017358_060 0.1279427354 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
17 Hb_008032_010 0.1346909671 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
18 Hb_132840_060 0.1388326594 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
19 Hb_171810_020 0.1406511193 - - peptide/glutathione transporter OPT1 [Vitis vinifera]
20 Hb_014870_010 0.1434682017 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_000103_170 Hb_000103_170 Hb_006277_090 Hb_006277_090 Hb_000103_170--Hb_006277_090 Hb_099509_010 Hb_099509_010 Hb_000103_170--Hb_099509_010 Hb_000032_130 Hb_000032_130 Hb_000103_170--Hb_000032_130 Hb_097104_010 Hb_097104_010 Hb_000103_170--Hb_097104_010 Hb_009083_060 Hb_009083_060 Hb_000103_170--Hb_009083_060 Hb_000037_210 Hb_000037_210 Hb_000103_170--Hb_000037_210 Hb_006277_090--Hb_099509_010 Hb_006277_090--Hb_000032_130 Hb_006277_090--Hb_097104_010 Hb_006277_090--Hb_009083_060 Hb_006277_090--Hb_000037_210 Hb_099509_010--Hb_009083_060 Hb_099509_010--Hb_000032_130 Hb_099509_010--Hb_000037_210 Hb_003428_020 Hb_003428_020 Hb_099509_010--Hb_003428_020 Hb_000032_130--Hb_097104_010 Hb_005253_050 Hb_005253_050 Hb_000032_130--Hb_005253_050 Hb_171810_020 Hb_171810_020 Hb_000032_130--Hb_171810_020 Hb_097104_010--Hb_099509_010 Hb_097104_010--Hb_005253_050 Hb_097104_010--Hb_171810_020 Hb_009083_060--Hb_000037_210 Hb_009083_060--Hb_003428_020 Hb_007676_090 Hb_007676_090 Hb_009083_060--Hb_007676_090 Hb_000186_020 Hb_000186_020 Hb_009083_060--Hb_000186_020 Hb_000084_270 Hb_000084_270 Hb_009083_060--Hb_000084_270 Hb_000037_210--Hb_003428_020 Hb_000037_210--Hb_007676_090 Hb_000037_210--Hb_000186_020 Hb_000037_210--Hb_000084_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.04599 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.295408

CAGE analysis