Hb_031862_160

Information

Type -
Description -
Location Contig31862: 191228-192044
Sequence    

Annotation

kegg
ID -
description -
nr
ID CBI18699.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A0A0E0LVZ6
description Uncharacterized protein OS=Oryza punctata PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031862_160 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_011900_030 0.117804615 - - hypothetical protein JCGZ_13686 [Jatropha curcas]
3 Hb_007761_040 0.1224139665 - - carbonyl reductase, putative [Ricinus communis]
4 Hb_002571_110 0.1284815085 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
5 Hb_000037_210 0.1490943906 - - -
6 Hb_009083_060 0.1490998685 - - PREDICTED: uncharacterized protein LOC103344557 [Prunus mume]
7 Hb_003428_020 0.1491071864 - - PREDICTED: uncharacterized protein LOC105140247 [Populus euphratica]
8 Hb_007676_090 0.1492295246 - - PREDICTED: uncharacterized protein LOC105644038 [Jatropha curcas]
9 Hb_000186_020 0.1534251426 - - PREDICTED: uncharacterized protein LOC104901327 [Beta vulgaris subsp. vulgaris]
10 Hb_000084_270 0.1552518979 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
11 Hb_099509_010 0.1602206493 - - PREDICTED: vacuolar iron transporter 1-like isoform X2 [Jatropha curcas]
12 Hb_010642_020 0.1608054827 - - NDH-dependent cyclic electron flow 1 isoform 2 [Theobroma cacao]
13 Hb_014870_010 0.1628902228 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
14 Hb_000479_340 0.1645503639 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
15 Hb_000103_170 0.1676269645 - - uncharacterized protein LOC100501254 [Zea mays]
16 Hb_006277_090 0.1710592458 - - PREDICTED: uncharacterized protein LOC105649700 [Jatropha curcas]
17 Hb_001401_050 0.178670472 - - PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Jatropha curcas]
18 Hb_002701_100 0.1788812025 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
19 Hb_005511_080 0.1789773171 - - Protein MLO, putative [Ricinus communis]
20 Hb_001085_280 0.1797558131 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_031862_160 Hb_031862_160 Hb_011900_030 Hb_011900_030 Hb_031862_160--Hb_011900_030 Hb_007761_040 Hb_007761_040 Hb_031862_160--Hb_007761_040 Hb_002571_110 Hb_002571_110 Hb_031862_160--Hb_002571_110 Hb_000037_210 Hb_000037_210 Hb_031862_160--Hb_000037_210 Hb_009083_060 Hb_009083_060 Hb_031862_160--Hb_009083_060 Hb_003428_020 Hb_003428_020 Hb_031862_160--Hb_003428_020 Hb_011900_030--Hb_007761_040 Hb_000189_460 Hb_000189_460 Hb_011900_030--Hb_000189_460 Hb_002977_020 Hb_002977_020 Hb_011900_030--Hb_002977_020 Hb_001021_020 Hb_001021_020 Hb_011900_030--Hb_001021_020 Hb_001242_030 Hb_001242_030 Hb_011900_030--Hb_001242_030 Hb_007761_040--Hb_002571_110 Hb_014870_010 Hb_014870_010 Hb_007761_040--Hb_014870_010 Hb_001935_050 Hb_001935_050 Hb_007761_040--Hb_001935_050 Hb_000864_040 Hb_000864_040 Hb_007761_040--Hb_000864_040 Hb_000084_270 Hb_000084_270 Hb_007761_040--Hb_000084_270 Hb_002571_110--Hb_000084_270 Hb_000186_020 Hb_000186_020 Hb_002571_110--Hb_000186_020 Hb_002571_110--Hb_014870_010 Hb_007676_090 Hb_007676_090 Hb_002571_110--Hb_007676_090 Hb_002571_110--Hb_003428_020 Hb_000037_210--Hb_009083_060 Hb_000037_210--Hb_003428_020 Hb_000037_210--Hb_007676_090 Hb_000037_210--Hb_000186_020 Hb_000037_210--Hb_000084_270 Hb_099509_010 Hb_099509_010 Hb_000037_210--Hb_099509_010 Hb_009083_060--Hb_003428_020 Hb_009083_060--Hb_007676_090 Hb_009083_060--Hb_000186_020 Hb_009083_060--Hb_000084_270 Hb_009083_060--Hb_099509_010 Hb_003428_020--Hb_007676_090 Hb_003428_020--Hb_000186_020 Hb_003428_020--Hb_000084_270 Hb_003428_020--Hb_099509_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0637122 0.97458 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.417928

CAGE analysis