Hb_000189_460

Information

Type -
Description -
Location Contig189: 379205-379856
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18697: 369169-378500 , PASA_asmbl_18699: 373784-378280
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_460 0.0 - - -
2 Hb_001021_020 0.0269138847 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
3 Hb_002977_020 0.0343160774 - - PREDICTED: glycine-rich cell wall structural protein 1.8-like [Nelumbo nucifera]
4 Hb_011900_030 0.1173473674 - - hypothetical protein JCGZ_13686 [Jatropha curcas]
5 Hb_001242_030 0.1216877299 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011930_060 0.1330311023 - - nitrate transporter, putative [Ricinus communis]
7 Hb_145331_010 0.1441238618 transcription factor TF Family: NAC hypothetical protein POPTR_0016s07690g [Populus trichocarpa]
8 Hb_000834_170 0.1547260396 - - polygalacturonase, putative [Ricinus communis]
9 Hb_001546_170 0.1585179106 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_100404_010 0.1613234002 - - Cysteine-rich receptor-like protein kinase 29 [Glycine soja]
11 Hb_002025_220 0.1621226674 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
12 Hb_001205_050 0.1633458108 - - -
13 Hb_000638_270 0.1734411175 - - -
14 Hb_005305_140 0.1787365166 - - unknown [Populus trichocarpa]
15 Hb_004176_090 0.1787876949 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
16 Hb_000227_180 0.1912392944 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
17 Hb_004109_140 0.1943290296 - - conserved hypothetical protein [Ricinus communis]
18 Hb_147069_010 0.1945644649 - - Phosphate import ATP-binding PstB 2 [Gossypium arboreum]
19 Hb_006970_040 0.1947925156 - - PREDICTED: uncharacterized protein LOC105650489 [Jatropha curcas]
20 Hb_001338_130 0.1969002815 - - hypothetical protein MTR_4g129340 [Medicago truncatula]

Gene co-expression network

sample Hb_000189_460 Hb_000189_460 Hb_001021_020 Hb_001021_020 Hb_000189_460--Hb_001021_020 Hb_002977_020 Hb_002977_020 Hb_000189_460--Hb_002977_020 Hb_011900_030 Hb_011900_030 Hb_000189_460--Hb_011900_030 Hb_001242_030 Hb_001242_030 Hb_000189_460--Hb_001242_030 Hb_011930_060 Hb_011930_060 Hb_000189_460--Hb_011930_060 Hb_145331_010 Hb_145331_010 Hb_000189_460--Hb_145331_010 Hb_001021_020--Hb_002977_020 Hb_001021_020--Hb_145331_010 Hb_001021_020--Hb_001242_030 Hb_001021_020--Hb_011900_030 Hb_001021_020--Hb_011930_060 Hb_002977_020--Hb_001242_030 Hb_002977_020--Hb_011930_060 Hb_002977_020--Hb_011900_030 Hb_100404_010 Hb_100404_010 Hb_002977_020--Hb_100404_010 Hb_007761_040 Hb_007761_040 Hb_011900_030--Hb_007761_040 Hb_031862_160 Hb_031862_160 Hb_011900_030--Hb_031862_160 Hb_011900_030--Hb_001242_030 Hb_001546_170 Hb_001546_170 Hb_001242_030--Hb_001546_170 Hb_000227_180 Hb_000227_180 Hb_001242_030--Hb_000227_180 Hb_001338_130 Hb_001338_130 Hb_001242_030--Hb_001338_130 Hb_001242_030--Hb_011930_060 Hb_000834_170 Hb_000834_170 Hb_011930_060--Hb_000834_170 Hb_002025_220 Hb_002025_220 Hb_011930_060--Hb_002025_220 Hb_005305_140 Hb_005305_140 Hb_011930_060--Hb_005305_140 Hb_000115_020 Hb_000115_020 Hb_011930_060--Hb_000115_020 Hb_011930_060--Hb_001338_130 Hb_107373_010 Hb_107373_010 Hb_011930_060--Hb_107373_010 Hb_004176_090 Hb_004176_090 Hb_145331_010--Hb_004176_090 Hb_001205_050 Hb_001205_050 Hb_145331_010--Hb_001205_050 Hb_145331_010--Hb_002977_020 Hb_147069_010 Hb_147069_010 Hb_145331_010--Hb_147069_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.060461 0.22462 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.234315

CAGE analysis