Hb_000227_180

Information

Type -
Description -
Location Contig227: 147719-151871
Sequence    

Annotation

kegg
ID rcu:RCOM_0913740
description glucose-1-phosphate adenylyltransferase, putative (EC:2.7.7.27)
nr
ID XP_012069562.1
description PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
swissprot
ID P55229
description Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3
trembl
ID A0A067KYT7
description Glucose-1-phosphate adenylyltransferase OS=Jatropha curcas GN=JCGZ_02131 PE=3 SV=1
Gene Ontology
ID GO:0009570
description glucose-1-phosphate adenylyltransferase large subunit chloroplastic amyloplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23612: 150698-151346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_180 0.0 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
2 Hb_001546_170 0.0564156966 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_025325_010 0.0983387324 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
4 Hb_001338_130 0.1061498552 - - hypothetical protein MTR_4g129340 [Medicago truncatula]
5 Hb_001242_030 0.1140220434 - - conserved hypothetical protein [Ricinus communis]
6 Hb_160045_010 0.1156383092 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006901_020 0.1195661041 - - PREDICTED: guard cell S-type anion channel SLAC1 [Jatropha curcas]
8 Hb_107373_010 0.1222511783 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
9 Hb_000307_150 0.1350973786 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
10 Hb_011930_060 0.13564893 - - nitrate transporter, putative [Ricinus communis]
11 Hb_003106_160 0.1358407551 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
12 Hb_005000_120 0.1420233182 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
13 Hb_000334_010 0.1434703543 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
14 Hb_028227_050 0.1472732057 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
15 Hb_000039_210 0.1483413163 - - PREDICTED: uncharacterized protein LOC105649449 [Jatropha curcas]
16 Hb_001892_080 0.1483453439 - - Clavata3/esr-related 16, putative [Theobroma cacao]
17 Hb_001621_090 0.1486081609 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]
18 Hb_000152_750 0.1517482721 - - peroxisomal biogenesis factor, putative [Ricinus communis]
19 Hb_001046_060 0.1553977799 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
20 Hb_004407_030 0.1564832108 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]

Gene co-expression network

sample Hb_000227_180 Hb_000227_180 Hb_001546_170 Hb_001546_170 Hb_000227_180--Hb_001546_170 Hb_025325_010 Hb_025325_010 Hb_000227_180--Hb_025325_010 Hb_001338_130 Hb_001338_130 Hb_000227_180--Hb_001338_130 Hb_001242_030 Hb_001242_030 Hb_000227_180--Hb_001242_030 Hb_160045_010 Hb_160045_010 Hb_000227_180--Hb_160045_010 Hb_006901_020 Hb_006901_020 Hb_000227_180--Hb_006901_020 Hb_001546_170--Hb_001242_030 Hb_001546_170--Hb_001338_130 Hb_011930_060 Hb_011930_060 Hb_001546_170--Hb_011930_060 Hb_001546_170--Hb_025325_010 Hb_107373_010 Hb_107373_010 Hb_001546_170--Hb_107373_010 Hb_001621_090 Hb_001621_090 Hb_025325_010--Hb_001621_090 Hb_025325_010--Hb_160045_010 Hb_005000_120 Hb_005000_120 Hb_025325_010--Hb_005000_120 Hb_006665_020 Hb_006665_020 Hb_025325_010--Hb_006665_020 Hb_025325_010--Hb_006901_020 Hb_025325_010--Hb_001338_130 Hb_001338_130--Hb_107373_010 Hb_001338_130--Hb_006901_020 Hb_001338_130--Hb_160045_010 Hb_001338_130--Hb_011930_060 Hb_002977_020 Hb_002977_020 Hb_001242_030--Hb_002977_020 Hb_000189_460 Hb_000189_460 Hb_001242_030--Hb_000189_460 Hb_001242_030--Hb_001338_130 Hb_001242_030--Hb_011930_060 Hb_185830_050 Hb_185830_050 Hb_160045_010--Hb_185830_050 Hb_000313_130 Hb_000313_130 Hb_160045_010--Hb_000313_130 Hb_001736_010 Hb_001736_010 Hb_160045_010--Hb_001736_010 Hb_000083_020 Hb_000083_020 Hb_160045_010--Hb_000083_020 Hb_005245_110 Hb_005245_110 Hb_160045_010--Hb_005245_110 Hb_000039_210 Hb_000039_210 Hb_006901_020--Hb_000039_210 Hb_006901_020--Hb_005000_120 Hb_011068_010 Hb_011068_010 Hb_006901_020--Hb_011068_010 Hb_003337_080 Hb_003337_080 Hb_006901_020--Hb_003337_080 Hb_001287_070 Hb_001287_070 Hb_006901_020--Hb_001287_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0140182 2.00993 10.6492 0.466353 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.128444 0.0808468 0 0 22.3432

CAGE analysis