Hb_001338_130

Information

Type -
Description -
Location Contig1338: 131543-135144
Sequence    

Annotation

kegg
ID mtr:MTR_4g129340
description hypothetical protein
nr
ID XP_003610225.1
description hypothetical protein MTR_4g129340 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID A0A078C9H5
description BnaC09g26890D protein OS=Brassica napus GN=BnaC09g26890D PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09528: 134965-135366
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001338_130 0.0 - - hypothetical protein MTR_4g129340 [Medicago truncatula]
2 Hb_107373_010 0.0618821631 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
3 Hb_025325_010 0.0844776382 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
4 Hb_006901_020 0.0986925302 - - PREDICTED: guard cell S-type anion channel SLAC1 [Jatropha curcas]
5 Hb_000227_180 0.1061498552 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
6 Hb_160045_010 0.1106458355 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011930_060 0.1118895128 - - nitrate transporter, putative [Ricinus communis]
8 Hb_000115_020 0.121106766 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
9 Hb_001621_090 0.122143313 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]
10 Hb_001546_170 0.1228441462 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_000307_150 0.1319981976 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
12 Hb_001892_080 0.1321848434 - - Clavata3/esr-related 16, putative [Theobroma cacao]
13 Hb_006665_020 0.1322210402 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
14 Hb_000039_210 0.1322487281 - - PREDICTED: uncharacterized protein LOC105649449 [Jatropha curcas]
15 Hb_001242_030 0.1322882249 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005000_120 0.132857453 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
17 Hb_003921_010 0.1356126509 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005649_060 0.1358954102 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
19 Hb_000450_050 0.1360719089 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
20 Hb_002609_140 0.1372694231 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001338_130 Hb_001338_130 Hb_107373_010 Hb_107373_010 Hb_001338_130--Hb_107373_010 Hb_025325_010 Hb_025325_010 Hb_001338_130--Hb_025325_010 Hb_006901_020 Hb_006901_020 Hb_001338_130--Hb_006901_020 Hb_000227_180 Hb_000227_180 Hb_001338_130--Hb_000227_180 Hb_160045_010 Hb_160045_010 Hb_001338_130--Hb_160045_010 Hb_011930_060 Hb_011930_060 Hb_001338_130--Hb_011930_060 Hb_107373_010--Hb_025325_010 Hb_002609_140 Hb_002609_140 Hb_107373_010--Hb_002609_140 Hb_005649_060 Hb_005649_060 Hb_107373_010--Hb_005649_060 Hb_000115_020 Hb_000115_020 Hb_107373_010--Hb_000115_020 Hb_000307_150 Hb_000307_150 Hb_107373_010--Hb_000307_150 Hb_001621_090 Hb_001621_090 Hb_025325_010--Hb_001621_090 Hb_025325_010--Hb_160045_010 Hb_005000_120 Hb_005000_120 Hb_025325_010--Hb_005000_120 Hb_006665_020 Hb_006665_020 Hb_025325_010--Hb_006665_020 Hb_025325_010--Hb_006901_020 Hb_000039_210 Hb_000039_210 Hb_006901_020--Hb_000039_210 Hb_006901_020--Hb_005000_120 Hb_011068_010 Hb_011068_010 Hb_006901_020--Hb_011068_010 Hb_003337_080 Hb_003337_080 Hb_006901_020--Hb_003337_080 Hb_001287_070 Hb_001287_070 Hb_006901_020--Hb_001287_070 Hb_001546_170 Hb_001546_170 Hb_000227_180--Hb_001546_170 Hb_000227_180--Hb_025325_010 Hb_001242_030 Hb_001242_030 Hb_000227_180--Hb_001242_030 Hb_000227_180--Hb_160045_010 Hb_000227_180--Hb_006901_020 Hb_185830_050 Hb_185830_050 Hb_160045_010--Hb_185830_050 Hb_000313_130 Hb_000313_130 Hb_160045_010--Hb_000313_130 Hb_001736_010 Hb_001736_010 Hb_160045_010--Hb_001736_010 Hb_000083_020 Hb_000083_020 Hb_160045_010--Hb_000083_020 Hb_005245_110 Hb_005245_110 Hb_160045_010--Hb_005245_110 Hb_000834_170 Hb_000834_170 Hb_011930_060--Hb_000834_170 Hb_002025_220 Hb_002025_220 Hb_011930_060--Hb_002025_220 Hb_005305_140 Hb_005305_140 Hb_011930_060--Hb_005305_140 Hb_011930_060--Hb_000115_020 Hb_011930_060--Hb_107373_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.241799 1.95165 0.135712 0.0268985 0.0240212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.29156

CAGE analysis