Hb_001546_170

Information

Type -
Description -
Location Contig1546: 169053-171487
Sequence    

Annotation

kegg
ID rcu:RCOM_1577280
description ankyrin repeat-containing protein, putative
nr
ID XP_002513462.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID A5PMU4
description Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Danio rerio GN=anks1b PE=3 SV=1
trembl
ID B9RI93
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1577280 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin-2-like isoform x4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13405: 169943-171344
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001546_170 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_000227_180 0.0564156966 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
3 Hb_001242_030 0.1053989204 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001338_130 0.1228441462 - - hypothetical protein MTR_4g129340 [Medicago truncatula]
5 Hb_011930_060 0.1231964774 - - nitrate transporter, putative [Ricinus communis]
6 Hb_025325_010 0.1307177471 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
7 Hb_107373_010 0.1318625844 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
8 Hb_002977_020 0.1345691671 - - PREDICTED: glycine-rich cell wall structural protein 1.8-like [Nelumbo nucifera]
9 Hb_000638_270 0.1415344268 - - -
10 Hb_003106_160 0.145049077 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
11 Hb_002762_020 0.1455242949 - - hypothetical protein VITISV_043202 [Vitis vinifera]
12 Hb_160045_010 0.1459779988 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000334_010 0.1472457606 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
14 Hb_000307_150 0.1488040436 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
15 Hb_100404_010 0.1495179929 - - Cysteine-rich receptor-like protein kinase 29 [Glycine soja]
16 Hb_000152_750 0.154266398 - - peroxisomal biogenesis factor, putative [Ricinus communis]
17 Hb_000189_460 0.1585179106 - - -
18 Hb_006901_020 0.1590160148 - - PREDICTED: guard cell S-type anion channel SLAC1 [Jatropha curcas]
19 Hb_002025_220 0.1606836004 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
20 Hb_000280_030 0.1674434221 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]

Gene co-expression network

sample Hb_001546_170 Hb_001546_170 Hb_000227_180 Hb_000227_180 Hb_001546_170--Hb_000227_180 Hb_001242_030 Hb_001242_030 Hb_001546_170--Hb_001242_030 Hb_001338_130 Hb_001338_130 Hb_001546_170--Hb_001338_130 Hb_011930_060 Hb_011930_060 Hb_001546_170--Hb_011930_060 Hb_025325_010 Hb_025325_010 Hb_001546_170--Hb_025325_010 Hb_107373_010 Hb_107373_010 Hb_001546_170--Hb_107373_010 Hb_000227_180--Hb_025325_010 Hb_000227_180--Hb_001338_130 Hb_000227_180--Hb_001242_030 Hb_160045_010 Hb_160045_010 Hb_000227_180--Hb_160045_010 Hb_006901_020 Hb_006901_020 Hb_000227_180--Hb_006901_020 Hb_002977_020 Hb_002977_020 Hb_001242_030--Hb_002977_020 Hb_000189_460 Hb_000189_460 Hb_001242_030--Hb_000189_460 Hb_001242_030--Hb_001338_130 Hb_001242_030--Hb_011930_060 Hb_001338_130--Hb_107373_010 Hb_001338_130--Hb_025325_010 Hb_001338_130--Hb_006901_020 Hb_001338_130--Hb_160045_010 Hb_001338_130--Hb_011930_060 Hb_000834_170 Hb_000834_170 Hb_011930_060--Hb_000834_170 Hb_002025_220 Hb_002025_220 Hb_011930_060--Hb_002025_220 Hb_005305_140 Hb_005305_140 Hb_011930_060--Hb_005305_140 Hb_000115_020 Hb_000115_020 Hb_011930_060--Hb_000115_020 Hb_011930_060--Hb_107373_010 Hb_001621_090 Hb_001621_090 Hb_025325_010--Hb_001621_090 Hb_025325_010--Hb_160045_010 Hb_005000_120 Hb_005000_120 Hb_025325_010--Hb_005000_120 Hb_006665_020 Hb_006665_020 Hb_025325_010--Hb_006665_020 Hb_025325_010--Hb_006901_020 Hb_107373_010--Hb_025325_010 Hb_002609_140 Hb_002609_140 Hb_107373_010--Hb_002609_140 Hb_005649_060 Hb_005649_060 Hb_107373_010--Hb_005649_060 Hb_107373_010--Hb_000115_020 Hb_000307_150 Hb_000307_150 Hb_107373_010--Hb_000307_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.643212 3.01898 0.0811705 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0731412 0.0191827 0 0.00763699 5.3399

CAGE analysis