Hb_160045_010

Information

Type -
Description -
Location Contig160045: 3354-4589
Sequence    

Annotation

kegg
ID rcu:RCOM_0854020
description hypothetical protein
nr
ID XP_002517454.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SFC7
description F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1
trembl
ID B9RUK9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0854020 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at3g07870-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_160045_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_025325_010 0.0697993448 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
3 Hb_185830_050 0.0867920584 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
4 Hb_000313_130 0.0874029574 - - zinc finger protein, putative [Ricinus communis]
5 Hb_001736_010 0.0945842807 - - ring finger protein, putative [Ricinus communis]
6 Hb_000083_020 0.0965700213 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
7 Hb_005245_110 0.0968708228 - - hypothetical protein CISIN_1g0225141mg [Citrus sinensis]
8 Hb_005605_010 0.0969047574 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
9 Hb_003337_080 0.0974784655 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
10 Hb_000037_090 0.0974999598 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
11 Hb_003921_010 0.0983499804 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006901_020 0.0994034504 - - PREDICTED: guard cell S-type anion channel SLAC1 [Jatropha curcas]
13 Hb_000640_090 0.1020572794 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
14 Hb_001823_010 0.1024495407 - - PREDICTED: ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
15 Hb_008566_060 0.1026065604 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001621_090 0.1057965562 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]
17 Hb_004837_230 0.106921001 - - unknown [Populus trichocarpa]
18 Hb_001046_060 0.1086595393 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
19 Hb_001338_130 0.1106458355 - - hypothetical protein MTR_4g129340 [Medicago truncatula]
20 Hb_006665_020 0.1114939013 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_160045_010 Hb_160045_010 Hb_025325_010 Hb_025325_010 Hb_160045_010--Hb_025325_010 Hb_185830_050 Hb_185830_050 Hb_160045_010--Hb_185830_050 Hb_000313_130 Hb_000313_130 Hb_160045_010--Hb_000313_130 Hb_001736_010 Hb_001736_010 Hb_160045_010--Hb_001736_010 Hb_000083_020 Hb_000083_020 Hb_160045_010--Hb_000083_020 Hb_005245_110 Hb_005245_110 Hb_160045_010--Hb_005245_110 Hb_001621_090 Hb_001621_090 Hb_025325_010--Hb_001621_090 Hb_005000_120 Hb_005000_120 Hb_025325_010--Hb_005000_120 Hb_006665_020 Hb_006665_020 Hb_025325_010--Hb_006665_020 Hb_006901_020 Hb_006901_020 Hb_025325_010--Hb_006901_020 Hb_001338_130 Hb_001338_130 Hb_025325_010--Hb_001338_130 Hb_008566_060 Hb_008566_060 Hb_185830_050--Hb_008566_060 Hb_001279_380 Hb_001279_380 Hb_185830_050--Hb_001279_380 Hb_027403_010 Hb_027403_010 Hb_185830_050--Hb_027403_010 Hb_000139_010 Hb_000139_010 Hb_185830_050--Hb_000139_010 Hb_000640_090 Hb_000640_090 Hb_185830_050--Hb_000640_090 Hb_002893_200 Hb_002893_200 Hb_185830_050--Hb_002893_200 Hb_000313_130--Hb_001736_010 Hb_007317_040 Hb_007317_040 Hb_000313_130--Hb_007317_040 Hb_000185_110 Hb_000185_110 Hb_000313_130--Hb_000185_110 Hb_000039_140 Hb_000039_140 Hb_000313_130--Hb_000039_140 Hb_029552_010 Hb_029552_010 Hb_000313_130--Hb_029552_010 Hb_019449_010 Hb_019449_010 Hb_000313_130--Hb_019449_010 Hb_001823_010 Hb_001823_010 Hb_001736_010--Hb_001823_010 Hb_003685_020 Hb_003685_020 Hb_001736_010--Hb_003685_020 Hb_034168_020 Hb_034168_020 Hb_001736_010--Hb_034168_020 Hb_001281_030 Hb_001281_030 Hb_001736_010--Hb_001281_030 Hb_000337_020 Hb_000337_020 Hb_001736_010--Hb_000337_020 Hb_005605_010 Hb_005605_010 Hb_000083_020--Hb_005605_010 Hb_000083_020--Hb_001823_010 Hb_006901_010 Hb_006901_010 Hb_000083_020--Hb_006901_010 Hb_000482_170 Hb_000482_170 Hb_000083_020--Hb_000482_170 Hb_000083_020--Hb_005245_110 Hb_002014_140 Hb_002014_140 Hb_000083_020--Hb_002014_140 Hb_003921_010 Hb_003921_010 Hb_005245_110--Hb_003921_010 Hb_005245_110--Hb_005605_010 Hb_004837_230 Hb_004837_230 Hb_005245_110--Hb_004837_230 Hb_005245_110--Hb_000482_170 Hb_005245_110--Hb_001823_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0284814 0.653562 0.025941 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.27725

CAGE analysis