Hb_001242_030

Information

Type -
Description -
Location Contig1242: 45426-46326
Sequence    

Annotation

kegg
ID rcu:RCOM_0961470
description hypothetical protein
nr
ID XP_002524327.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SEA8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0961470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001242_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002977_020 0.0932657118 - - PREDICTED: glycine-rich cell wall structural protein 1.8-like [Nelumbo nucifera]
3 Hb_001546_170 0.1053989204 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_000227_180 0.1140220434 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
5 Hb_000189_460 0.1216877299 - - -
6 Hb_001338_130 0.1322882249 - - hypothetical protein MTR_4g129340 [Medicago truncatula]
7 Hb_011930_060 0.1336814219 - - nitrate transporter, putative [Ricinus communis]
8 Hb_160045_010 0.1362052011 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001021_020 0.1400199136 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
10 Hb_000152_750 0.144648888 - - peroxisomal biogenesis factor, putative [Ricinus communis]
11 Hb_100404_010 0.1450932532 - - Cysteine-rich receptor-like protein kinase 29 [Glycine soja]
12 Hb_011900_030 0.1452806515 - - hypothetical protein JCGZ_13686 [Jatropha curcas]
13 Hb_025325_010 0.1487769234 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
14 Hb_000638_270 0.1583802067 - - -
15 Hb_107373_010 0.1646633244 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
16 Hb_002762_020 0.1693442686 - - hypothetical protein VITISV_043202 [Vitis vinifera]
17 Hb_000313_160 0.1709007838 - - BnaC02g20570D [Brassica napus]
18 Hb_001946_230 0.1709296855 - - -
19 Hb_000337_020 0.1709734966 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
20 Hb_001281_030 0.1710389088 - - hypothetical protein POPTR_0010s18450g [Populus trichocarpa]

Gene co-expression network

sample Hb_001242_030 Hb_001242_030 Hb_002977_020 Hb_002977_020 Hb_001242_030--Hb_002977_020 Hb_001546_170 Hb_001546_170 Hb_001242_030--Hb_001546_170 Hb_000227_180 Hb_000227_180 Hb_001242_030--Hb_000227_180 Hb_000189_460 Hb_000189_460 Hb_001242_030--Hb_000189_460 Hb_001338_130 Hb_001338_130 Hb_001242_030--Hb_001338_130 Hb_011930_060 Hb_011930_060 Hb_001242_030--Hb_011930_060 Hb_002977_020--Hb_000189_460 Hb_001021_020 Hb_001021_020 Hb_002977_020--Hb_001021_020 Hb_002977_020--Hb_011930_060 Hb_011900_030 Hb_011900_030 Hb_002977_020--Hb_011900_030 Hb_100404_010 Hb_100404_010 Hb_002977_020--Hb_100404_010 Hb_001546_170--Hb_000227_180 Hb_001546_170--Hb_001338_130 Hb_001546_170--Hb_011930_060 Hb_025325_010 Hb_025325_010 Hb_001546_170--Hb_025325_010 Hb_107373_010 Hb_107373_010 Hb_001546_170--Hb_107373_010 Hb_000227_180--Hb_025325_010 Hb_000227_180--Hb_001338_130 Hb_160045_010 Hb_160045_010 Hb_000227_180--Hb_160045_010 Hb_006901_020 Hb_006901_020 Hb_000227_180--Hb_006901_020 Hb_000189_460--Hb_001021_020 Hb_000189_460--Hb_011900_030 Hb_000189_460--Hb_011930_060 Hb_145331_010 Hb_145331_010 Hb_000189_460--Hb_145331_010 Hb_001338_130--Hb_107373_010 Hb_001338_130--Hb_025325_010 Hb_001338_130--Hb_006901_020 Hb_001338_130--Hb_160045_010 Hb_001338_130--Hb_011930_060 Hb_000834_170 Hb_000834_170 Hb_011930_060--Hb_000834_170 Hb_002025_220 Hb_002025_220 Hb_011930_060--Hb_002025_220 Hb_005305_140 Hb_005305_140 Hb_011930_060--Hb_005305_140 Hb_000115_020 Hb_000115_020 Hb_011930_060--Hb_000115_020 Hb_011930_060--Hb_107373_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.113432 0.728274 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.14149

CAGE analysis