Hb_002154_080

Information

Type -
Description -
Location Contig2154: 72836-80433
Sequence    

Annotation

kegg
ID osa:9268655
description Os08g0506200
nr
ID EYU18270.1
description hypothetical protein MIMGU_mgv1a018017mg, partial [Erythranthe guttata]
swissprot
ID -
description -
trembl
ID A0A022PVJ7
description Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a018017mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22276: 76983-77140 , PASA_asmbl_22277: 79913-80312
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002154_080 0.0 - - hypothetical protein MIMGU_mgv1a018017mg, partial [Erythranthe guttata]
2 Hb_000959_050 0.1922101523 - - PREDICTED: uncharacterized protein LOC102627366 [Citrus sinensis]
3 Hb_001863_410 0.1995537285 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_142522_040 0.212876015 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_000812_030 0.2396681817 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
6 Hb_000028_270 0.2425626852 - - -
7 Hb_000527_120 0.2462200882 - - hypothetical protein VITISV_027174 [Vitis vinifera]
8 Hb_001405_230 0.2477179301 - - STELAR K+ outward rectifier isoform 2 [Theobroma cacao]
9 Hb_028048_020 0.2477830854 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
10 Hb_001711_040 0.2489517665 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009434_060 0.2490726111 - - T4.15 [Malus x robusta]
12 Hb_000060_130 0.2513263084 - - -
13 Hb_003527_020 0.2522633439 - - BnaC01g27150D [Brassica napus]
14 Hb_000856_120 0.2585996503 transcription factor TF Family: LOB PREDICTED: myb-like protein M [Pyrus x bretschneideri]
15 Hb_058095_030 0.2628324559 - - -
16 Hb_002110_110 0.2688008167 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
17 Hb_118046_010 0.2693446421 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
18 Hb_007543_020 0.2696182835 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
19 Hb_003106_250 0.2698676038 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
20 Hb_000173_110 0.2699763362 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]

Gene co-expression network

sample Hb_002154_080 Hb_002154_080 Hb_000959_050 Hb_000959_050 Hb_002154_080--Hb_000959_050 Hb_001863_410 Hb_001863_410 Hb_002154_080--Hb_001863_410 Hb_142522_040 Hb_142522_040 Hb_002154_080--Hb_142522_040 Hb_000812_030 Hb_000812_030 Hb_002154_080--Hb_000812_030 Hb_000028_270 Hb_000028_270 Hb_002154_080--Hb_000028_270 Hb_000527_120 Hb_000527_120 Hb_002154_080--Hb_000527_120 Hb_000060_130 Hb_000060_130 Hb_000959_050--Hb_000060_130 Hb_003527_020 Hb_003527_020 Hb_000959_050--Hb_003527_020 Hb_001247_260 Hb_001247_260 Hb_000959_050--Hb_001247_260 Hb_000636_010 Hb_000636_010 Hb_000959_050--Hb_000636_010 Hb_007543_020 Hb_007543_020 Hb_000959_050--Hb_007543_020 Hb_000856_120 Hb_000856_120 Hb_001863_410--Hb_000856_120 Hb_001711_040 Hb_001711_040 Hb_001863_410--Hb_001711_040 Hb_118046_010 Hb_118046_010 Hb_001863_410--Hb_118046_010 Hb_003442_120 Hb_003442_120 Hb_001863_410--Hb_003442_120 Hb_001863_410--Hb_000028_270 Hb_000732_180 Hb_000732_180 Hb_142522_040--Hb_000732_180 Hb_116784_020 Hb_116784_020 Hb_142522_040--Hb_116784_020 Hb_000820_100 Hb_000820_100 Hb_142522_040--Hb_000820_100 Hb_001366_260 Hb_001366_260 Hb_142522_040--Hb_001366_260 Hb_142522_040--Hb_007543_020 Hb_000173_110 Hb_000173_110 Hb_142522_040--Hb_000173_110 Hb_000032_020 Hb_000032_020 Hb_000812_030--Hb_000032_020 Hb_010921_020 Hb_010921_020 Hb_000812_030--Hb_010921_020 Hb_001229_030 Hb_001229_030 Hb_000812_030--Hb_001229_030 Hb_002110_110 Hb_002110_110 Hb_000812_030--Hb_002110_110 Hb_003106_250 Hb_003106_250 Hb_000812_030--Hb_003106_250 Hb_005183_140 Hb_005183_140 Hb_000812_030--Hb_005183_140 Hb_058095_030 Hb_058095_030 Hb_000028_270--Hb_058095_030 Hb_000028_270--Hb_118046_010 Hb_004063_010 Hb_004063_010 Hb_000028_270--Hb_004063_010 Hb_000028_270--Hb_003442_120 Hb_005765_020 Hb_005765_020 Hb_000028_270--Hb_005765_020 Hb_002585_060 Hb_002585_060 Hb_000028_270--Hb_002585_060 Hb_000527_120--Hb_000173_110 Hb_000527_120--Hb_142522_040 Hb_000527_120--Hb_001366_260 Hb_000527_120--Hb_000820_100 Hb_009434_060 Hb_009434_060 Hb_000527_120--Hb_009434_060 Hb_000527_120--Hb_007543_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0161833 0.115557 0.0509516 0 0.0324419 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0580999 0.181108

CAGE analysis