Hb_001711_040

Information

Type -
Description -
Location Contig1711: 32948-33300
Sequence    

Annotation

kegg
ID rcu:RCOM_0864980
description hypothetical protein
nr
ID XP_002519834.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S1G9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0864980 PE=4 SV=1
Gene Ontology
ID GO:0009790
description seed maturation protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15985: 34215-37893
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001711_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000856_120 0.1819614419 transcription factor TF Family: LOB PREDICTED: myb-like protein M [Pyrus x bretschneideri]
3 Hb_005765_020 0.2134391128 - - -
4 Hb_001863_410 0.2145973948 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_000028_270 0.2258088193 - - -
6 Hb_000832_010 0.2260555595 - - hypothetical protein VITISV_005044 [Vitis vinifera]
7 Hb_058095_030 0.2376676325 - - -
8 Hb_148121_030 0.2449005782 - - PREDICTED: zinc-finger homeodomain protein 14 [Gossypium raimondii]
9 Hb_002585_060 0.2450760801 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
10 Hb_032299_070 0.2456800447 - - -
11 Hb_002154_080 0.2489517665 - - hypothetical protein MIMGU_mgv1a018017mg, partial [Erythranthe guttata]
12 Hb_005618_110 0.2513262251 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
13 Hb_001856_110 0.2541199495 - - PREDICTED: cellulose synthase-like protein G2 [Populus euphratica]
14 Hb_006992_030 0.2564710617 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
15 Hb_040963_010 0.2569060593 - - PREDICTED: polyneuridine-aldehyde esterase-like [Populus euphratica]
16 Hb_031949_010 0.2576869742 - - -
17 Hb_001388_020 0.2582399953 - - PREDICTED: F-box/kelch-repeat protein SKIP20 [Jatropha curcas]
18 Hb_108557_020 0.2587405491 transcription factor TF Family: B3 Zeamatin precursor, putative [Ricinus communis]
19 Hb_118046_010 0.2590941265 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
20 Hb_048476_070 0.2591585574 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001711_040 Hb_001711_040 Hb_000856_120 Hb_000856_120 Hb_001711_040--Hb_000856_120 Hb_005765_020 Hb_005765_020 Hb_001711_040--Hb_005765_020 Hb_001863_410 Hb_001863_410 Hb_001711_040--Hb_001863_410 Hb_000028_270 Hb_000028_270 Hb_001711_040--Hb_000028_270 Hb_000832_010 Hb_000832_010 Hb_001711_040--Hb_000832_010 Hb_058095_030 Hb_058095_030 Hb_001711_040--Hb_058095_030 Hb_000856_120--Hb_001863_410 Hb_005999_010 Hb_005999_010 Hb_000856_120--Hb_005999_010 Hb_003442_120 Hb_003442_120 Hb_000856_120--Hb_003442_120 Hb_009780_010 Hb_009780_010 Hb_000856_120--Hb_009780_010 Hb_118046_010 Hb_118046_010 Hb_000856_120--Hb_118046_010 Hb_006992_030 Hb_006992_030 Hb_005765_020--Hb_006992_030 Hb_005765_020--Hb_058095_030 Hb_005765_020--Hb_000028_270 Hb_002585_060 Hb_002585_060 Hb_005765_020--Hb_002585_060 Hb_003927_020 Hb_003927_020 Hb_005765_020--Hb_003927_020 Hb_032299_070 Hb_032299_070 Hb_005765_020--Hb_032299_070 Hb_002154_080 Hb_002154_080 Hb_001863_410--Hb_002154_080 Hb_001863_410--Hb_118046_010 Hb_001863_410--Hb_003442_120 Hb_001863_410--Hb_000028_270 Hb_000028_270--Hb_058095_030 Hb_000028_270--Hb_118046_010 Hb_004063_010 Hb_004063_010 Hb_000028_270--Hb_004063_010 Hb_000028_270--Hb_003442_120 Hb_000028_270--Hb_002585_060 Hb_001871_030 Hb_001871_030 Hb_000832_010--Hb_001871_030 Hb_006274_020 Hb_006274_020 Hb_000832_010--Hb_006274_020 Hb_002729_020 Hb_002729_020 Hb_000832_010--Hb_002729_020 Hb_000832_010--Hb_005765_020 Hb_019641_020 Hb_019641_020 Hb_000832_010--Hb_019641_020 Hb_072173_010 Hb_072173_010 Hb_000832_010--Hb_072173_010 Hb_058095_030--Hb_002585_060 Hb_058095_030--Hb_004063_010 Hb_058095_030--Hb_118046_010 Hb_008642_050 Hb_008642_050 Hb_058095_030--Hb_008642_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.500058 1.76015 0.623188 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.8469 2.22515

CAGE analysis