Hb_000856_120

Information

Type transcription factor
Description TF Family: LOB
Location Contig856: 100641-100979
Sequence    

Annotation

kegg
ID pxb:103960574
description myb-like protein M
nr
ID XP_009371337.1
description PREDICTED: myb-like protein M [Pyrus x bretschneideri]
swissprot
ID Q9LIJ0
description LOB domain-containing protein 26 OS=Arabidopsis thaliana GN=LBD26 PE=2 SV=2
trembl
ID A0A072UMQ1
description LOB domain protein OS=Medicago truncatula GN=MTR_4g088035 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_120 0.0 transcription factor TF Family: LOB PREDICTED: myb-like protein M [Pyrus x bretschneideri]
2 Hb_001863_410 0.1805034788 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_001711_040 0.1819614419 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005999_010 0.2186675079 - - Sugar transporter ERD6-like 5 [Morus notabilis]
5 Hb_003442_120 0.2294935285 - - hypothetical protein VITISV_019818 [Vitis vinifera]
6 Hb_009780_010 0.2324361251 - - conserved hypothetical protein [Ricinus communis]
7 Hb_118046_010 0.2335222398 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
8 Hb_002025_240 0.2389796092 - - -
9 Hb_130579_050 0.2495225536 - - hypothetical protein JCGZ_25577 [Jatropha curcas]
10 Hb_012807_070 0.2523464085 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
11 Hb_000028_270 0.2534661322 - - -
12 Hb_002154_080 0.2585996503 - - hypothetical protein MIMGU_mgv1a018017mg, partial [Erythranthe guttata]
13 Hb_004021_120 0.2591487049 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
14 Hb_000812_030 0.2593555211 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
15 Hb_017098_020 0.2594582531 - - Zinc finger protein GIS2 [Medicago truncatula]
16 Hb_004063_010 0.2646148363 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_001229_030 0.2659973555 - - PREDICTED: uncharacterized protein LOC104783713 [Camelina sativa]
18 Hb_013786_010 0.2679284482 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_003062_020 0.2697296769 - - Polyprotein, putative [Solanum demissum]
20 Hb_003727_060 0.2752606519 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000856_120 Hb_000856_120 Hb_001863_410 Hb_001863_410 Hb_000856_120--Hb_001863_410 Hb_001711_040 Hb_001711_040 Hb_000856_120--Hb_001711_040 Hb_005999_010 Hb_005999_010 Hb_000856_120--Hb_005999_010 Hb_003442_120 Hb_003442_120 Hb_000856_120--Hb_003442_120 Hb_009780_010 Hb_009780_010 Hb_000856_120--Hb_009780_010 Hb_118046_010 Hb_118046_010 Hb_000856_120--Hb_118046_010 Hb_002154_080 Hb_002154_080 Hb_001863_410--Hb_002154_080 Hb_001863_410--Hb_001711_040 Hb_001863_410--Hb_118046_010 Hb_001863_410--Hb_003442_120 Hb_000028_270 Hb_000028_270 Hb_001863_410--Hb_000028_270 Hb_005765_020 Hb_005765_020 Hb_001711_040--Hb_005765_020 Hb_001711_040--Hb_000028_270 Hb_000832_010 Hb_000832_010 Hb_001711_040--Hb_000832_010 Hb_058095_030 Hb_058095_030 Hb_001711_040--Hb_058095_030 Hb_002232_050 Hb_002232_050 Hb_005999_010--Hb_002232_050 Hb_000417_030 Hb_000417_030 Hb_005999_010--Hb_000417_030 Hb_001579_170 Hb_001579_170 Hb_005999_010--Hb_001579_170 Hb_006718_040 Hb_006718_040 Hb_005999_010--Hb_006718_040 Hb_001946_060 Hb_001946_060 Hb_005999_010--Hb_001946_060 Hb_003442_120--Hb_118046_010 Hb_002025_240 Hb_002025_240 Hb_003442_120--Hb_002025_240 Hb_004063_010 Hb_004063_010 Hb_003442_120--Hb_004063_010 Hb_130579_050 Hb_130579_050 Hb_003442_120--Hb_130579_050 Hb_003727_060 Hb_003727_060 Hb_003442_120--Hb_003727_060 Hb_003442_120--Hb_000028_270 Hb_017098_020 Hb_017098_020 Hb_009780_010--Hb_017098_020 Hb_003062_020 Hb_003062_020 Hb_009780_010--Hb_003062_020 Hb_012807_070 Hb_012807_070 Hb_009780_010--Hb_012807_070 Hb_011038_020 Hb_011038_020 Hb_009780_010--Hb_011038_020 Hb_090889_010 Hb_090889_010 Hb_009780_010--Hb_090889_010 Hb_101034_020 Hb_101034_020 Hb_009780_010--Hb_101034_020 Hb_118046_010--Hb_004063_010 Hb_118046_010--Hb_003727_060 Hb_118046_010--Hb_130579_050 Hb_118046_010--Hb_002025_240 Hb_118046_010--Hb_000028_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.117504 0.576777 0.189779 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.197692 0.362635

CAGE analysis