Hb_001579_170

Information

Type -
Description -
Location Contig1579: 116905-123306
Sequence    

Annotation

kegg
ID rcu:RCOM_0491770
description Desacetoxyvindoline 4-hydroxylase, putative (EC:1.14.11.23 1.14.11.20)
nr
ID CBI21960.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q84MB3
description 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1
trembl
ID A0A0D3C845
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID GO:0005506
description desacetoxyvindoline 4-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13824: 116669-118623
cDNA
(Sanger)
(ID:Location)		 030_J18.ab1: 117693-118549 , 031_G24.ab1: 117672-118623 , 050_N20.ab1: 118275-118515

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_170 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_002518_270 0.1663554275 - - glycogen phosphorylase, putative [Ricinus communis]
3 Hb_001946_060 0.1667145629 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
4 Hb_000421_020 0.1799716974 - - ascorbate peroxidase [Hevea brasiliensis]
5 Hb_005186_090 0.1832658575 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_010578_050 0.1849912668 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
7 Hb_001769_030 0.1859175477 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
8 Hb_000008_080 0.190541971 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002030_170 0.1913133802 - - PREDICTED: calcium-transporting ATPase 1-like [Jatropha curcas]
10 Hb_000163_250 0.1924802196 - - unnamed protein product [Vitis vinifera]
11 Hb_001252_040 0.1935711375 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
12 Hb_000085_230 0.1944813629 - - PREDICTED: probable long-chain-alcohol O-fatty-acyltransferase 5 [Jatropha curcas]
13 Hb_000625_060 0.1964030008 - - Protein P21, putative [Ricinus communis]
14 Hb_000723_120 0.1964846168 - - PREDICTED: UDP-glycosyltransferase 86A1 [Jatropha curcas]
15 Hb_002269_030 0.1971273904 - - hypothetical protein CISIN_1g018400mg [Citrus sinensis]
16 Hb_004218_160 0.2001616782 - - NBS-LRR type disease resistance protein [Medicago truncatula]
17 Hb_001842_060 0.2006138478 desease resistance Gene Name: ABC_trans_N hypothetical protein JCGZ_10908 [Jatropha curcas]
18 Hb_075449_040 0.2011241833 - - PREDICTED: meiotic recombination protein SPO11-1 [Jatropha curcas]
19 Hb_033045_010 0.2032813358 - - copine, putative [Ricinus communis]
20 Hb_000130_080 0.2041961941 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_001579_170 Hb_001579_170 Hb_002518_270 Hb_002518_270 Hb_001579_170--Hb_002518_270 Hb_001946_060 Hb_001946_060 Hb_001579_170--Hb_001946_060 Hb_000421_020 Hb_000421_020 Hb_001579_170--Hb_000421_020 Hb_005186_090 Hb_005186_090 Hb_001579_170--Hb_005186_090 Hb_010578_050 Hb_010578_050 Hb_001579_170--Hb_010578_050 Hb_001769_030 Hb_001769_030 Hb_001579_170--Hb_001769_030 Hb_006970_150 Hb_006970_150 Hb_002518_270--Hb_006970_150 Hb_006501_170 Hb_006501_170 Hb_002518_270--Hb_006501_170 Hb_003337_050 Hb_003337_050 Hb_002518_270--Hb_003337_050 Hb_033045_010 Hb_033045_010 Hb_002518_270--Hb_033045_010 Hb_008948_080 Hb_008948_080 Hb_002518_270--Hb_008948_080 Hb_002518_270--Hb_001946_060 Hb_000163_250 Hb_000163_250 Hb_001946_060--Hb_000163_250 Hb_001085_230 Hb_001085_230 Hb_001946_060--Hb_001085_230 Hb_007919_030 Hb_007919_030 Hb_001946_060--Hb_007919_030 Hb_000037_010 Hb_000037_010 Hb_001946_060--Hb_000037_010 Hb_000808_220 Hb_000808_220 Hb_001946_060--Hb_000808_220 Hb_025236_020 Hb_025236_020 Hb_000421_020--Hb_025236_020 Hb_000008_430 Hb_000008_430 Hb_000421_020--Hb_000008_430 Hb_002375_050 Hb_002375_050 Hb_000421_020--Hb_002375_050 Hb_002910_010 Hb_002910_010 Hb_000421_020--Hb_002910_010 Hb_003589_020 Hb_003589_020 Hb_000421_020--Hb_003589_020 Hb_002343_020 Hb_002343_020 Hb_000421_020--Hb_002343_020 Hb_000625_060 Hb_000625_060 Hb_005186_090--Hb_000625_060 Hb_005186_090--Hb_010578_050 Hb_000030_260 Hb_000030_260 Hb_005186_090--Hb_000030_260 Hb_000130_080 Hb_000130_080 Hb_005186_090--Hb_000130_080 Hb_004286_030 Hb_004286_030 Hb_005186_090--Hb_004286_030 Hb_001842_060 Hb_001842_060 Hb_005186_090--Hb_001842_060 Hb_002783_320 Hb_002783_320 Hb_010578_050--Hb_002783_320 Hb_010578_050--Hb_000625_060 Hb_010578_050--Hb_000030_260 Hb_000836_390 Hb_000836_390 Hb_010578_050--Hb_000836_390 Hb_000120_070 Hb_000120_070 Hb_010578_050--Hb_000120_070 Hb_001623_470 Hb_001623_470 Hb_001769_030--Hb_001623_470 Hb_000489_020 Hb_000489_020 Hb_001769_030--Hb_000489_020 Hb_152718_010 Hb_152718_010 Hb_001769_030--Hb_152718_010 Hb_005333_100 Hb_005333_100 Hb_001769_030--Hb_005333_100 Hb_001355_110 Hb_001355_110 Hb_001769_030--Hb_001355_110 Hb_000203_060 Hb_000203_060 Hb_001769_030--Hb_000203_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.30679 57.3666 20.7065 5.42296 6.98489 1.56062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.29176 0.0423526 0.0538108 49.8829 10.4096

CAGE analysis