Hb_002375_050

Information

Type -
Description -
Location Contig2375: 66376-75325
Sequence    

Annotation

kegg
ID vvi:104878039
description uncharacterized LOC104878039
nr
ID XP_010646031.1
description PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID B9T4C3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0356800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24943: 68519-75666 , PASA_asmbl_24946: 70917-71155
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002375_050 0.0 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
2 Hb_000421_020 0.1372675466 - - ascorbate peroxidase [Hevea brasiliensis]
3 Hb_000189_470 0.1579292374 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
4 Hb_002471_140 0.159126026 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
5 Hb_000345_340 0.1598371022 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
6 Hb_001053_200 0.1674200872 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
7 Hb_008175_030 0.1681225329 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
8 Hb_002477_120 0.1686185727 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
9 Hb_000645_240 0.1704415041 - - AMP dependent ligase, putative [Ricinus communis]
10 Hb_000866_090 0.1716535006 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
11 Hb_008667_060 0.1720872051 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
12 Hb_004976_040 0.1739073202 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
13 Hb_001699_150 0.1741626762 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
14 Hb_003589_020 0.174381058 - - -
15 Hb_001842_060 0.1757863785 desease resistance Gene Name: ABC_trans_N hypothetical protein JCGZ_10908 [Jatropha curcas]
16 Hb_001251_060 0.1772012015 - - aldo/keto reductase AKR [Manihot esculenta]
17 Hb_005880_010 0.1797442363 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
18 Hb_033642_070 0.1822190655 - - PREDICTED: oligopeptide transporter 7-like [Jatropha curcas]
19 Hb_002475_130 0.1823050728 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
20 Hb_001409_050 0.1833321473 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_002375_050 Hb_002375_050 Hb_000421_020 Hb_000421_020 Hb_002375_050--Hb_000421_020 Hb_000189_470 Hb_000189_470 Hb_002375_050--Hb_000189_470 Hb_002471_140 Hb_002471_140 Hb_002375_050--Hb_002471_140 Hb_000345_340 Hb_000345_340 Hb_002375_050--Hb_000345_340 Hb_001053_200 Hb_001053_200 Hb_002375_050--Hb_001053_200 Hb_008175_030 Hb_008175_030 Hb_002375_050--Hb_008175_030 Hb_025236_020 Hb_025236_020 Hb_000421_020--Hb_025236_020 Hb_000008_430 Hb_000008_430 Hb_000421_020--Hb_000008_430 Hb_002910_010 Hb_002910_010 Hb_000421_020--Hb_002910_010 Hb_003589_020 Hb_003589_020 Hb_000421_020--Hb_003589_020 Hb_002343_020 Hb_002343_020 Hb_000421_020--Hb_002343_020 Hb_089100_040 Hb_089100_040 Hb_000189_470--Hb_089100_040 Hb_122273_020 Hb_122273_020 Hb_000189_470--Hb_122273_020 Hb_002918_320 Hb_002918_320 Hb_000189_470--Hb_002918_320 Hb_002005_120 Hb_002005_120 Hb_000189_470--Hb_002005_120 Hb_001699_150 Hb_001699_150 Hb_000189_470--Hb_001699_150 Hb_000413_250 Hb_000413_250 Hb_000189_470--Hb_000413_250 Hb_002471_140--Hb_000345_340 Hb_008667_060 Hb_008667_060 Hb_002471_140--Hb_008667_060 Hb_000059_130 Hb_000059_130 Hb_002471_140--Hb_000059_130 Hb_000866_090 Hb_000866_090 Hb_002471_140--Hb_000866_090 Hb_001251_060 Hb_001251_060 Hb_002471_140--Hb_001251_060 Hb_002477_120 Hb_002477_120 Hb_002471_140--Hb_002477_120 Hb_000345_340--Hb_008667_060 Hb_000271_120 Hb_000271_120 Hb_000345_340--Hb_000271_120 Hb_001080_140 Hb_001080_140 Hb_000345_340--Hb_001080_140 Hb_000345_340--Hb_000866_090 Hb_000345_340--Hb_000059_130 Hb_008103_100 Hb_008103_100 Hb_001053_200--Hb_008103_100 Hb_001662_170 Hb_001662_170 Hb_001053_200--Hb_001662_170 Hb_001951_240 Hb_001951_240 Hb_001053_200--Hb_001951_240 Hb_000649_300 Hb_000649_300 Hb_001053_200--Hb_000649_300 Hb_005496_160 Hb_005496_160 Hb_001053_200--Hb_005496_160 Hb_004032_310 Hb_004032_310 Hb_001053_200--Hb_004032_310 Hb_000778_020 Hb_000778_020 Hb_008175_030--Hb_000778_020 Hb_002739_060 Hb_002739_060 Hb_008175_030--Hb_002739_060 Hb_005880_010 Hb_005880_010 Hb_008175_030--Hb_005880_010 Hb_001408_150 Hb_001408_150 Hb_008175_030--Hb_001408_150 Hb_057079_020 Hb_057079_020 Hb_008175_030--Hb_057079_020 Hb_000532_130 Hb_000532_130 Hb_008175_030--Hb_000532_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.61369 12.973 4.09607 1.90879 1.6604 0.623964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.344571 0.622094 0.321918 7.41201 2.89083

CAGE analysis