Hb_003589_020

Information

Type -
Description -
Location Contig3589: 2685-9389
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37004: 7158-7507
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003589_020 0.0 - - -
2 Hb_000421_020 0.1482006606 - - ascorbate peroxidase [Hevea brasiliensis]
3 Hb_000008_430 0.1599847839 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
4 Hb_002375_050 0.174381058 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
5 Hb_000953_040 0.174968746 - - hypothetical protein OsJ_19135 [Oryza sativa Japonica Group]
6 Hb_002910_010 0.1773548058 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
7 Hb_001409_050 0.1784791345 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_001053_200 0.1786515563 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
9 Hb_005724_050 0.180897411 - - -
10 Hb_002609_190 0.1817666382 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
11 Hb_004800_130 0.1834220489 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
12 Hb_001205_180 0.1895281012 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
13 Hb_025236_020 0.1895887631 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
14 Hb_008103_100 0.1898588868 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
15 Hb_000613_220 0.1938195659 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
16 Hb_000058_050 0.1945711012 - - PREDICTED: uncharacterized protein LOC105640877 [Jatropha curcas]
17 Hb_095471_020 0.1980495449 - - -
18 Hb_000649_300 0.2011415977 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
19 Hb_001195_020 0.2012904222 - - PREDICTED: ornithine carbamoyltransferase, chloroplastic [Jatropha curcas]
20 Hb_000610_060 0.201297795 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]

Gene co-expression network

sample Hb_003589_020 Hb_003589_020 Hb_000421_020 Hb_000421_020 Hb_003589_020--Hb_000421_020 Hb_000008_430 Hb_000008_430 Hb_003589_020--Hb_000008_430 Hb_002375_050 Hb_002375_050 Hb_003589_020--Hb_002375_050 Hb_000953_040 Hb_000953_040 Hb_003589_020--Hb_000953_040 Hb_002910_010 Hb_002910_010 Hb_003589_020--Hb_002910_010 Hb_001409_050 Hb_001409_050 Hb_003589_020--Hb_001409_050 Hb_025236_020 Hb_025236_020 Hb_000421_020--Hb_025236_020 Hb_000421_020--Hb_000008_430 Hb_000421_020--Hb_002375_050 Hb_000421_020--Hb_002910_010 Hb_002343_020 Hb_002343_020 Hb_000421_020--Hb_002343_020 Hb_005724_050 Hb_005724_050 Hb_000008_430--Hb_005724_050 Hb_004032_090 Hb_004032_090 Hb_000008_430--Hb_004032_090 Hb_001294_040 Hb_001294_040 Hb_000008_430--Hb_001294_040 Hb_007290_070 Hb_007290_070 Hb_000008_430--Hb_007290_070 Hb_005539_100 Hb_005539_100 Hb_000008_430--Hb_005539_100 Hb_001205_180 Hb_001205_180 Hb_000008_430--Hb_001205_180 Hb_000189_470 Hb_000189_470 Hb_002375_050--Hb_000189_470 Hb_002471_140 Hb_002471_140 Hb_002375_050--Hb_002471_140 Hb_000345_340 Hb_000345_340 Hb_002375_050--Hb_000345_340 Hb_001053_200 Hb_001053_200 Hb_002375_050--Hb_001053_200 Hb_008175_030 Hb_008175_030 Hb_002375_050--Hb_008175_030 Hb_110567_010 Hb_110567_010 Hb_000953_040--Hb_110567_010 Hb_001195_020 Hb_001195_020 Hb_000953_040--Hb_001195_020 Hb_000953_040--Hb_002471_140 Hb_029622_020 Hb_029622_020 Hb_000953_040--Hb_029622_020 Hb_001842_060 Hb_001842_060 Hb_000953_040--Hb_001842_060 Hb_005504_030 Hb_005504_030 Hb_000953_040--Hb_005504_030 Hb_000649_300 Hb_000649_300 Hb_002910_010--Hb_000649_300 Hb_002910_010--Hb_001053_200 Hb_008103_100 Hb_008103_100 Hb_002910_010--Hb_008103_100 Hb_000027_130 Hb_000027_130 Hb_002910_010--Hb_000027_130 Hb_000771_070 Hb_000771_070 Hb_002910_010--Hb_000771_070 Hb_002073_020 Hb_002073_020 Hb_002910_010--Hb_002073_020 Hb_001409_050--Hb_005724_050 Hb_001409_050--Hb_001053_200 Hb_003216_050 Hb_003216_050 Hb_001409_050--Hb_003216_050 Hb_000732_230 Hb_000732_230 Hb_001409_050--Hb_000732_230 Hb_001951_240 Hb_001951_240 Hb_001409_050--Hb_001951_240 Hb_001409_050--Hb_000008_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.710969 6.16575 4.46413 1.16991 1.46811 0.171611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.108335 0.528503 0.194164 3.01724 0.973832

CAGE analysis