Hb_000101_280

Information

Type -
Description -
Location Contig101: 294462-297640
Sequence    

Annotation

kegg
ID pop:POPTR_0018s02450g
description POPTRDRAFT_910433; hypothetical protein
nr
ID XP_002324325.2
description hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
swissprot
ID P47735
description Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1
trembl
ID B9IL48
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s02450g PE=4 SV=2
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_280 0.0 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
2 Hb_163663_010 0.1604119585 - - PREDICTED: uncharacterized protein LOC105629934 [Jatropha curcas]
3 Hb_000709_020 0.2004662622 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_087426_010 0.2022691533 - - PREDICTED: uncharacterized protein LOC105803348 [Gossypium raimondii]
5 Hb_037790_010 0.2429266325 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
6 Hb_001160_010 0.2533983782 - - -
7 Hb_041476_010 0.2903939867 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
8 Hb_056550_010 0.2904443692 - - PREDICTED: uncharacterized protein LOC104112577 [Nicotiana tomentosiformis]
9 Hb_002224_050 0.2905419435 - - PREDICTED: uncharacterized protein LOC104764484 isoform X1 [Camelina sativa]
10 Hb_004018_010 0.2985284541 - - PREDICTED: uncharacterized protein LOC105784835 [Gossypium raimondii]
11 Hb_000351_150 0.3021738324 - - Wall-associated kinase 2, putative [Theobroma cacao]
12 Hb_000541_010 0.3026885475 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_003245_010 0.3037654858 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_165958_010 0.3038605246 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_007659_010 0.304289406 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
16 Hb_005356_060 0.3071370365 - - hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
17 Hb_008727_130 0.3132007212 - - hypothetical protein EUGRSUZ_J01958 [Eucalyptus grandis]
18 Hb_117252_010 0.3153334125 - - hypothetical protein [Pseudomonas tolaasii]
19 Hb_042795_010 0.3193897611 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_053575_010 0.3231843637 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_000101_280 Hb_000101_280 Hb_163663_010 Hb_163663_010 Hb_000101_280--Hb_163663_010 Hb_000709_020 Hb_000709_020 Hb_000101_280--Hb_000709_020 Hb_087426_010 Hb_087426_010 Hb_000101_280--Hb_087426_010 Hb_037790_010 Hb_037790_010 Hb_000101_280--Hb_037790_010 Hb_001160_010 Hb_001160_010 Hb_000101_280--Hb_001160_010 Hb_041476_010 Hb_041476_010 Hb_000101_280--Hb_041476_010 Hb_163663_010--Hb_000709_020 Hb_163663_010--Hb_087426_010 Hb_004018_010 Hb_004018_010 Hb_163663_010--Hb_004018_010 Hb_056550_010 Hb_056550_010 Hb_163663_010--Hb_056550_010 Hb_000351_150 Hb_000351_150 Hb_163663_010--Hb_000351_150 Hb_000709_020--Hb_004018_010 Hb_000709_020--Hb_087426_010 Hb_000709_020--Hb_056550_010 Hb_000709_020--Hb_000351_150 Hb_087426_010--Hb_056550_010 Hb_087426_010--Hb_000351_150 Hb_087426_010--Hb_004018_010 Hb_000018_050 Hb_000018_050 Hb_037790_010--Hb_000018_050 Hb_002860_020 Hb_002860_020 Hb_037790_010--Hb_002860_020 Hb_037790_010--Hb_163663_010 Hb_037790_010--Hb_087426_010 Hb_037790_010--Hb_000709_020 Hb_005451_020 Hb_005451_020 Hb_001160_010--Hb_005451_020 Hb_005356_060 Hb_005356_060 Hb_001160_010--Hb_005356_060 Hb_000140_430 Hb_000140_430 Hb_001160_010--Hb_000140_430 Hb_153142_010 Hb_153142_010 Hb_001160_010--Hb_153142_010 Hb_021068_010 Hb_021068_010 Hb_001160_010--Hb_021068_010 Hb_002224_050 Hb_002224_050 Hb_041476_010--Hb_002224_050 Hb_000541_010 Hb_000541_010 Hb_041476_010--Hb_000541_010 Hb_003245_010 Hb_003245_010 Hb_041476_010--Hb_003245_010 Hb_165958_010 Hb_165958_010 Hb_041476_010--Hb_165958_010 Hb_117252_010 Hb_117252_010 Hb_041476_010--Hb_117252_010 Hb_007659_010 Hb_007659_010 Hb_041476_010--Hb_007659_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00771354 0 0 0 0 0.0173125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0237485

CAGE analysis