Hb_002860_020

Information

Type -
Description -
Location Contig2860: 17218-21861
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002860_020 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_037790_010 0.2393550717 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
3 Hb_134711_010 0.2634045862 - - hypothetical protein EUGRSUZ_D00316 [Eucalyptus grandis]
4 Hb_000018_050 0.307835009 - - PREDICTED: uncharacterized protein LOC104899363 [Beta vulgaris subsp. vulgaris]
5 Hb_010589_140 0.3612699646 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Fragaria vesca subsp. vesca]
6 Hb_155720_010 0.3653977491 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
7 Hb_164370_010 0.3679053106 - - -
8 Hb_002639_060 0.3692786768 - - -
9 Hb_002027_150 0.376645776 - - -
10 Hb_097969_010 0.3770396143 - - F-box/LRR-repeat protein, putative [Ricinus communis]
11 Hb_028487_090 0.3780716523 - - -
12 Hb_032496_020 0.391404403 - - -
13 Hb_009486_010 0.3921365663 - - -
14 Hb_000347_050 0.3992845154 - - PREDICTED: ABC transporter B family member 3-like [Jatropha curcas]
15 Hb_002078_060 0.4004101672 - - hypothetical protein JCGZ_17943 [Jatropha curcas]
16 Hb_003086_120 0.4023831565 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
17 Hb_002870_050 0.4036057543 - - -
18 Hb_002374_130 0.4049195262 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
19 Hb_006869_010 0.4055833167 - - unnamed protein product [Coffea canephora]
20 Hb_001233_040 0.4073210854 - - PREDICTED: uncharacterized protein LOC105775263 [Gossypium raimondii]

Gene co-expression network

sample Hb_002860_020 Hb_002860_020 Hb_037790_010 Hb_037790_010 Hb_002860_020--Hb_037790_010 Hb_134711_010 Hb_134711_010 Hb_002860_020--Hb_134711_010 Hb_000018_050 Hb_000018_050 Hb_002860_020--Hb_000018_050 Hb_010589_140 Hb_010589_140 Hb_002860_020--Hb_010589_140 Hb_155720_010 Hb_155720_010 Hb_002860_020--Hb_155720_010 Hb_164370_010 Hb_164370_010 Hb_002860_020--Hb_164370_010 Hb_037790_010--Hb_000018_050 Hb_000101_280 Hb_000101_280 Hb_037790_010--Hb_000101_280 Hb_163663_010 Hb_163663_010 Hb_037790_010--Hb_163663_010 Hb_087426_010 Hb_087426_010 Hb_037790_010--Hb_087426_010 Hb_000709_020 Hb_000709_020 Hb_037790_010--Hb_000709_020 Hb_002027_150 Hb_002027_150 Hb_134711_010--Hb_002027_150 Hb_011139_050 Hb_011139_050 Hb_134711_010--Hb_011139_050 Hb_001233_040 Hb_001233_040 Hb_134711_010--Hb_001233_040 Hb_187024_090 Hb_187024_090 Hb_134711_010--Hb_187024_090 Hb_033363_070 Hb_033363_070 Hb_134711_010--Hb_033363_070 Hb_007904_010 Hb_007904_010 Hb_000018_050--Hb_007904_010 Hb_005822_030 Hb_005822_030 Hb_000018_050--Hb_005822_030 Hb_006212_030 Hb_006212_030 Hb_000018_050--Hb_006212_030 Hb_002374_130 Hb_002374_130 Hb_000018_050--Hb_002374_130 Hb_019617_010 Hb_019617_010 Hb_000018_050--Hb_019617_010 Hb_009246_010 Hb_009246_010 Hb_010589_140--Hb_009246_010 Hb_002639_060 Hb_002639_060 Hb_010589_140--Hb_002639_060 Hb_000772_040 Hb_000772_040 Hb_010589_140--Hb_000772_040 Hb_001703_120 Hb_001703_120 Hb_010589_140--Hb_001703_120 Hb_039262_010 Hb_039262_010 Hb_010589_140--Hb_039262_010 Hb_000399_010 Hb_000399_010 Hb_010589_140--Hb_000399_010 Hb_155720_010--Hb_019617_010 Hb_114988_010 Hb_114988_010 Hb_155720_010--Hb_114988_010 Hb_003605_010 Hb_003605_010 Hb_155720_010--Hb_003605_010 Hb_173121_010 Hb_173121_010 Hb_155720_010--Hb_173121_010 Hb_067730_010 Hb_067730_010 Hb_155720_010--Hb_067730_010 Hb_003725_050 Hb_003725_050 Hb_155720_010--Hb_003725_050 Hb_007545_020 Hb_007545_020 Hb_164370_010--Hb_007545_020 Hb_003209_160 Hb_003209_160 Hb_164370_010--Hb_003209_160 Hb_002141_040 Hb_002141_040 Hb_164370_010--Hb_002141_040 Hb_028755_010 Hb_028755_010 Hb_164370_010--Hb_028755_010 Hb_004738_050 Hb_004738_050 Hb_164370_010--Hb_004738_050 Hb_164370_010--Hb_002639_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00933164 0 0 0 0 0.0244309
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0166346 0 0.00329395 0.0178292

CAGE analysis