Hb_067730_010

Information

Type -
Description -
Location Contig67730: 2811-5792
Sequence    

Annotation

kegg
ID zma:103640354
description uncharacterized LOC103640354
nr
ID EEE65753.1
description hypothetical protein OsJ_21419 [Oryza sativa Japonica Group]
swissprot
ID -
description -
trembl
ID A0A0A9AFY1
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067730_010 0.0 - - hypothetical protein OsJ_21419 [Oryza sativa Japonica Group]
2 Hb_001221_360 0.2885075643 - - late embryogenesis abundant, putative [Ricinus communis]
3 Hb_003605_010 0.2934754941 - - -
4 Hb_009710_030 0.3005692238 - - -
5 Hb_011139_050 0.3025992847 - - nicotinate phosphoribosyltransferase family protein [Populus trichocarpa]
6 Hb_002085_100 0.3067892342 - - PREDICTED: syntaxin-72 isoform X1 [Jatropha curcas]
7 Hb_006940_020 0.3080546055 - - polyprotein [Oryza australiensis]
8 Hb_001733_040 0.3123617525 - - PREDICTED: flowering time control protein FCA isoform X2 [Jatropha curcas]
9 Hb_173121_010 0.3157269495 - - -
10 Hb_004208_010 0.3173546999 - - PREDICTED: uncharacterized protein LOC105914588 [Setaria italica]
11 Hb_012286_080 0.320085399 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
12 Hb_008008_020 0.3209929493 - - -
13 Hb_155720_010 0.3237448592 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
14 Hb_000237_210 0.3242142923 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003940_050 0.3257493994 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
16 Hb_002874_140 0.3271983726 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 11 homolog [Prunus mume]
17 Hb_008092_080 0.3274360731 - - elongation factor ts, putative [Ricinus communis]
18 Hb_003413_010 0.3294979742 - - hypothetical protein, partial [Pseudomonas fluorescens]
19 Hb_000100_110 0.3301616711 - - -
20 Hb_012490_110 0.3363813779 - - PREDICTED: uncharacterized membrane protein C776.05 [Jatropha curcas]

Gene co-expression network

sample Hb_067730_010 Hb_067730_010 Hb_001221_360 Hb_001221_360 Hb_067730_010--Hb_001221_360 Hb_003605_010 Hb_003605_010 Hb_067730_010--Hb_003605_010 Hb_009710_030 Hb_009710_030 Hb_067730_010--Hb_009710_030 Hb_011139_050 Hb_011139_050 Hb_067730_010--Hb_011139_050 Hb_002085_100 Hb_002085_100 Hb_067730_010--Hb_002085_100 Hb_006940_020 Hb_006940_020 Hb_067730_010--Hb_006940_020 Hb_001221_360--Hb_006940_020 Hb_000997_140 Hb_000997_140 Hb_001221_360--Hb_000997_140 Hb_010565_030 Hb_010565_030 Hb_001221_360--Hb_010565_030 Hb_003029_140 Hb_003029_140 Hb_001221_360--Hb_003029_140 Hb_140389_010 Hb_140389_010 Hb_001221_360--Hb_140389_010 Hb_007576_150 Hb_007576_150 Hb_001221_360--Hb_007576_150 Hb_003927_060 Hb_003927_060 Hb_003605_010--Hb_003927_060 Hb_173121_010 Hb_173121_010 Hb_003605_010--Hb_173121_010 Hb_019617_010 Hb_019617_010 Hb_003605_010--Hb_019617_010 Hb_002996_020 Hb_002996_020 Hb_003605_010--Hb_002996_020 Hb_111854_010 Hb_111854_010 Hb_003605_010--Hb_111854_010 Hb_009615_180 Hb_009615_180 Hb_009710_030--Hb_009615_180 Hb_011364_020 Hb_011364_020 Hb_009710_030--Hb_011364_020 Hb_003226_190 Hb_003226_190 Hb_009710_030--Hb_003226_190 Hb_002783_150 Hb_002783_150 Hb_009710_030--Hb_002783_150 Hb_030959_010 Hb_030959_010 Hb_009710_030--Hb_030959_010 Hb_001546_010 Hb_001546_010 Hb_009710_030--Hb_001546_010 Hb_011872_010 Hb_011872_010 Hb_011139_050--Hb_011872_010 Hb_000272_040 Hb_000272_040 Hb_011139_050--Hb_000272_040 Hb_148800_010 Hb_148800_010 Hb_011139_050--Hb_148800_010 Hb_000656_050 Hb_000656_050 Hb_011139_050--Hb_000656_050 Hb_007317_090 Hb_007317_090 Hb_011139_050--Hb_007317_090 Hb_004466_050 Hb_004466_050 Hb_011139_050--Hb_004466_050 Hb_002681_080 Hb_002681_080 Hb_002085_100--Hb_002681_080 Hb_022213_030 Hb_022213_030 Hb_002085_100--Hb_022213_030 Hb_008511_140 Hb_008511_140 Hb_002085_100--Hb_008511_140 Hb_000495_080 Hb_000495_080 Hb_002085_100--Hb_000495_080 Hb_000529_140 Hb_000529_140 Hb_002085_100--Hb_000529_140 Hb_000656_330 Hb_000656_330 Hb_002085_100--Hb_000656_330 Hb_006940_020--Hb_010565_030 Hb_003687_160 Hb_003687_160 Hb_006940_020--Hb_003687_160 Hb_003020_300 Hb_003020_300 Hb_006940_020--Hb_003020_300 Hb_000173_110 Hb_000173_110 Hb_006940_020--Hb_000173_110 Hb_004242_120 Hb_004242_120 Hb_006940_020--Hb_004242_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0694437 0.0728302 0.00711603 0.0362235 0 0.0711395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0514467 0 0.0204617 0.290199

CAGE analysis