Hb_173121_010

Information

Type -
Description -
Location Contig173121: 134-1165
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173121_010 0.0 - - -
2 Hb_032634_010 0.2544795334 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
3 Hb_003605_010 0.2816969538 - - -
4 Hb_002235_290 0.288175528 - - PREDICTED: casparian strip membrane protein 5 [Jatropha curcas]
5 Hb_019617_010 0.2980647844 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_067730_010 0.3157269495 - - hypothetical protein OsJ_21419 [Oryza sativa Japonica Group]
7 Hb_155720_010 0.3174243888 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
8 Hb_004459_070 0.3209988545 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
9 Hb_000671_140 0.3409727695 - - hypothetical protein VITISV_003767 [Vitis vinifera]
10 Hb_000018_050 0.342731815 - - PREDICTED: uncharacterized protein LOC104899363 [Beta vulgaris subsp. vulgaris]
11 Hb_004994_370 0.3441084896 - - -
12 Hb_007313_060 0.3448234751 - - PREDICTED: paramyosin [Jatropha curcas]
13 Hb_000347_050 0.3460120925 - - PREDICTED: ABC transporter B family member 3-like [Jatropha curcas]
14 Hb_040290_010 0.3466084784 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
15 Hb_002253_090 0.3509637034 - - Chitinase 1 precursor, putative [Ricinus communis]
16 Hb_006054_050 0.3509854883 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
17 Hb_001488_260 0.3524133932 - - Alpha-2-macroglobulin [Gossypium arboreum]
18 Hb_003940_050 0.3527474791 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
19 Hb_001307_040 0.3574643672 - - PREDICTED: AT-rich interactive domain-containing protein 4B [Jatropha curcas]
20 Hb_003927_060 0.3578574369 - - hypothetical protein JCGZ_05636 [Jatropha curcas]

Gene co-expression network

sample Hb_173121_010 Hb_173121_010 Hb_032634_010 Hb_032634_010 Hb_173121_010--Hb_032634_010 Hb_003605_010 Hb_003605_010 Hb_173121_010--Hb_003605_010 Hb_002235_290 Hb_002235_290 Hb_173121_010--Hb_002235_290 Hb_019617_010 Hb_019617_010 Hb_173121_010--Hb_019617_010 Hb_067730_010 Hb_067730_010 Hb_173121_010--Hb_067730_010 Hb_155720_010 Hb_155720_010 Hb_173121_010--Hb_155720_010 Hb_032634_010--Hb_019617_010 Hb_005822_030 Hb_005822_030 Hb_032634_010--Hb_005822_030 Hb_081703_020 Hb_081703_020 Hb_032634_010--Hb_081703_020 Hb_003927_060 Hb_003927_060 Hb_032634_010--Hb_003927_060 Hb_000608_430 Hb_000608_430 Hb_032634_010--Hb_000608_430 Hb_003605_010--Hb_003927_060 Hb_003605_010--Hb_019617_010 Hb_003605_010--Hb_067730_010 Hb_002996_020 Hb_002996_020 Hb_003605_010--Hb_002996_020 Hb_111854_010 Hb_111854_010 Hb_003605_010--Hb_111854_010 Hb_187951_010 Hb_187951_010 Hb_002235_290--Hb_187951_010 Hb_011139_050 Hb_011139_050 Hb_002235_290--Hb_011139_050 Hb_002988_030 Hb_002988_030 Hb_002235_290--Hb_002988_030 Hb_006018_070 Hb_006018_070 Hb_002235_290--Hb_006018_070 Hb_002639_060 Hb_002639_060 Hb_002235_290--Hb_002639_060 Hb_019617_010--Hb_155720_010 Hb_019617_010--Hb_005822_030 Hb_000018_050 Hb_000018_050 Hb_019617_010--Hb_000018_050 Hb_001221_360 Hb_001221_360 Hb_067730_010--Hb_001221_360 Hb_009710_030 Hb_009710_030 Hb_067730_010--Hb_009710_030 Hb_067730_010--Hb_011139_050 Hb_002085_100 Hb_002085_100 Hb_067730_010--Hb_002085_100 Hb_006940_020 Hb_006940_020 Hb_067730_010--Hb_006940_020 Hb_114988_010 Hb_114988_010 Hb_155720_010--Hb_114988_010 Hb_155720_010--Hb_003605_010 Hb_155720_010--Hb_067730_010 Hb_003725_050 Hb_003725_050 Hb_155720_010--Hb_003725_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.328438 0.165144 0.10565 0 0.0600784 0.115011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.235583 0 0 0.650346

CAGE analysis