Hb_187951_010

Information

Type -
Description -
Location Contig187951: 18-1001
Sequence    

Annotation

kegg
ID pda:103724373
description uncharacterized LOC103724373
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID A0A0B0MQD4
description Phosphate import ATP-binding PstB 2 OS=Gossypium arboreum GN=F383_30012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187951_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_002235_290 0.2287102315 - - PREDICTED: casparian strip membrane protein 5 [Jatropha curcas]
3 Hb_037281_010 0.2838259873 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
4 Hb_012286_080 0.3057869048 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
5 Hb_097969_010 0.3545928432 - - F-box/LRR-repeat protein, putative [Ricinus communis]
6 Hb_000742_150 0.3594380532 - - -
7 Hb_002996_020 0.3654137054 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_003124_210 0.3676367248 - - conserved hypothetical protein [Ricinus communis]
9 Hb_173121_010 0.3680229435 - - -
10 Hb_000529_200 0.3691896377 - - -
11 Hb_111854_010 0.3708494013 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
12 Hb_004076_040 0.3720119601 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_098068_010 0.3771419368 - - PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
14 Hb_008008_020 0.3836849781 - - -
15 Hb_002874_140 0.3837809262 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 11 homolog [Prunus mume]
16 Hb_001001_100 0.3858388368 - - PREDICTED: uncharacterized protein LOC105650392 [Jatropha curcas]
17 Hb_118014_010 0.3867693604 - - PREDICTED: uncharacterized protein LOC104214283 [Nicotiana sylvestris]
18 Hb_001427_030 0.3875406081 - - conserved hypothetical protein [Ricinus communis]
19 Hb_145157_010 0.3881376676 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
20 Hb_011139_050 0.3928549493 - - nicotinate phosphoribosyltransferase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_187951_010 Hb_187951_010 Hb_002235_290 Hb_002235_290 Hb_187951_010--Hb_002235_290 Hb_037281_010 Hb_037281_010 Hb_187951_010--Hb_037281_010 Hb_012286_080 Hb_012286_080 Hb_187951_010--Hb_012286_080 Hb_097969_010 Hb_097969_010 Hb_187951_010--Hb_097969_010 Hb_000742_150 Hb_000742_150 Hb_187951_010--Hb_000742_150 Hb_002996_020 Hb_002996_020 Hb_187951_010--Hb_002996_020 Hb_173121_010 Hb_173121_010 Hb_002235_290--Hb_173121_010 Hb_011139_050 Hb_011139_050 Hb_002235_290--Hb_011139_050 Hb_002988_030 Hb_002988_030 Hb_002235_290--Hb_002988_030 Hb_006018_070 Hb_006018_070 Hb_002235_290--Hb_006018_070 Hb_002639_060 Hb_002639_060 Hb_002235_290--Hb_002639_060 Hb_004076_040 Hb_004076_040 Hb_037281_010--Hb_004076_040 Hb_184746_010 Hb_184746_010 Hb_037281_010--Hb_184746_010 Hb_020469_010 Hb_020469_010 Hb_037281_010--Hb_020469_010 Hb_037281_010--Hb_002235_290 Hb_014720_130 Hb_014720_130 Hb_037281_010--Hb_014720_130 Hb_008008_020 Hb_008008_020 Hb_012286_080--Hb_008008_020 Hb_111854_010 Hb_111854_010 Hb_012286_080--Hb_111854_010 Hb_166631_010 Hb_166631_010 Hb_012286_080--Hb_166631_010 Hb_000148_010 Hb_000148_010 Hb_012286_080--Hb_000148_010 Hb_143398_020 Hb_143398_020 Hb_012286_080--Hb_143398_020 Hb_028487_090 Hb_028487_090 Hb_097969_010--Hb_028487_090 Hb_002374_130 Hb_002374_130 Hb_097969_010--Hb_002374_130 Hb_002870_050 Hb_002870_050 Hb_097969_010--Hb_002870_050 Hb_097969_010--Hb_037281_010 Hb_002860_020 Hb_002860_020 Hb_097969_010--Hb_002860_020 Hb_003915_040 Hb_003915_040 Hb_000742_150--Hb_003915_040 Hb_132317_010 Hb_132317_010 Hb_000742_150--Hb_132317_010 Hb_000703_300 Hb_000703_300 Hb_000742_150--Hb_000703_300 Hb_007193_050 Hb_007193_050 Hb_000742_150--Hb_007193_050 Hb_032705_020 Hb_032705_020 Hb_000742_150--Hb_032705_020 Hb_070758_010 Hb_070758_010 Hb_000742_150--Hb_070758_010 Hb_003605_010 Hb_003605_010 Hb_002996_020--Hb_003605_010 Hb_002996_020--Hb_111854_010 Hb_004981_010 Hb_004981_010 Hb_002996_020--Hb_004981_010 Hb_002996_020--Hb_008008_020 Hb_003717_020 Hb_003717_020 Hb_002996_020--Hb_003717_020 Hb_002874_140 Hb_002874_140 Hb_002996_020--Hb_002874_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0266341 0.0198711 0 0.0265474 0.0541921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0477621 0 0 0.0966041

CAGE analysis