Hb_002235_290

Information

Type -
Description -
Location Contig2235: 234043-234842
Sequence    

Annotation

kegg
ID fve:101311982
description CASP-like protein 1-like
nr
ID XP_012084850.1
description PREDICTED: casparian strip membrane protein 5 [Jatropha curcas]
swissprot
ID B9T4E6
description Casparian strip membrane protein 5 OS=Ricinus communis GN=RCOM_0299440 PE=3 SV=1
trembl
ID A0A067JTD8
description CASP-like protein OS=Jatropha curcas GN=JCGZ_19866 PE=3 SV=1
Gene Ontology
ID GO:0016020
description casparian strip membrane protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_290 0.0 - - PREDICTED: casparian strip membrane protein 5 [Jatropha curcas]
2 Hb_187951_010 0.2287102315 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_173121_010 0.288175528 - - -
4 Hb_011139_050 0.3003251324 - - nicotinate phosphoribosyltransferase family protein [Populus trichocarpa]
5 Hb_002988_030 0.3064530489 - - hypothetical protein EUGRSUZ_K02073 [Eucalyptus grandis]
6 Hb_006018_070 0.3213218789 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
7 Hb_002639_060 0.3321021531 - - -
8 Hb_040290_010 0.3339265648 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_003605_010 0.3375072747 - - -
10 Hb_092337_030 0.3456496803 - - -
11 Hb_000671_140 0.3460417389 - - hypothetical protein VITISV_003767 [Vitis vinifera]
12 Hb_040153_010 0.3478343944 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
13 Hb_001307_040 0.3496742113 - - PREDICTED: AT-rich interactive domain-containing protein 4B [Jatropha curcas]
14 Hb_080085_010 0.3543966786 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
15 Hb_000529_200 0.3623676915 - - -
16 Hb_037281_010 0.3627859581 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
17 Hb_000109_030 0.3646400963 - - -
18 Hb_002141_040 0.3651908407 - - -
19 Hb_070758_010 0.3659305487 - - -
20 Hb_002150_110 0.3664648637 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]

Gene co-expression network

sample Hb_002235_290 Hb_002235_290 Hb_187951_010 Hb_187951_010 Hb_002235_290--Hb_187951_010 Hb_173121_010 Hb_173121_010 Hb_002235_290--Hb_173121_010 Hb_011139_050 Hb_011139_050 Hb_002235_290--Hb_011139_050 Hb_002988_030 Hb_002988_030 Hb_002235_290--Hb_002988_030 Hb_006018_070 Hb_006018_070 Hb_002235_290--Hb_006018_070 Hb_002639_060 Hb_002639_060 Hb_002235_290--Hb_002639_060 Hb_037281_010 Hb_037281_010 Hb_187951_010--Hb_037281_010 Hb_012286_080 Hb_012286_080 Hb_187951_010--Hb_012286_080 Hb_097969_010 Hb_097969_010 Hb_187951_010--Hb_097969_010 Hb_000742_150 Hb_000742_150 Hb_187951_010--Hb_000742_150 Hb_002996_020 Hb_002996_020 Hb_187951_010--Hb_002996_020 Hb_032634_010 Hb_032634_010 Hb_173121_010--Hb_032634_010 Hb_003605_010 Hb_003605_010 Hb_173121_010--Hb_003605_010 Hb_019617_010 Hb_019617_010 Hb_173121_010--Hb_019617_010 Hb_067730_010 Hb_067730_010 Hb_173121_010--Hb_067730_010 Hb_155720_010 Hb_155720_010 Hb_173121_010--Hb_155720_010 Hb_011872_010 Hb_011872_010 Hb_011139_050--Hb_011872_010 Hb_000272_040 Hb_000272_040 Hb_011139_050--Hb_000272_040 Hb_148800_010 Hb_148800_010 Hb_011139_050--Hb_148800_010 Hb_000656_050 Hb_000656_050 Hb_011139_050--Hb_000656_050 Hb_007317_090 Hb_007317_090 Hb_011139_050--Hb_007317_090 Hb_004466_050 Hb_004466_050 Hb_011139_050--Hb_004466_050 Hb_118453_010 Hb_118453_010 Hb_002988_030--Hb_118453_010 Hb_002793_060 Hb_002793_060 Hb_002988_030--Hb_002793_060 Hb_005736_050 Hb_005736_050 Hb_002988_030--Hb_005736_050 Hb_044086_010 Hb_044086_010 Hb_002988_030--Hb_044086_010 Hb_004074_030 Hb_004074_030 Hb_002988_030--Hb_004074_030 Hb_002485_040 Hb_002485_040 Hb_002988_030--Hb_002485_040 Hb_013691_020 Hb_013691_020 Hb_006018_070--Hb_013691_020 Hb_005511_100 Hb_005511_100 Hb_006018_070--Hb_005511_100 Hb_003073_050 Hb_003073_050 Hb_006018_070--Hb_003073_050 Hb_002151_080 Hb_002151_080 Hb_006018_070--Hb_002151_080 Hb_003061_010 Hb_003061_010 Hb_006018_070--Hb_003061_010 Hb_000032_060 Hb_000032_060 Hb_006018_070--Hb_000032_060 Hb_007926_040 Hb_007926_040 Hb_002639_060--Hb_007926_040 Hb_032496_020 Hb_032496_020 Hb_002639_060--Hb_032496_020 Hb_002205_050 Hb_002205_050 Hb_002639_060--Hb_002205_050 Hb_007101_200 Hb_007101_200 Hb_002639_060--Hb_007101_200 Hb_009543_020 Hb_009543_020 Hb_002639_060--Hb_009543_020 Hb_003786_020 Hb_003786_020 Hb_002639_060--Hb_003786_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0555598 0.105098 0.0455765 0 0.0560138 0.199332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.102089 0 0 0.191681

CAGE analysis