Hb_118453_010

Information

Type -
Description -
Location Contig118453: 26-487
Sequence    

Annotation

kegg
ID tcc:TCM_008450
description hypothetical protein
nr
ID CAN76317.1
description hypothetical protein VITISV_012360 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B1P9
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118453_010 0.0 - - hypothetical protein VITISV_012360 [Vitis vinifera]
2 Hb_003216_050 0.2192498848 - - PREDICTED: OBERON-like protein [Jatropha curcas]
3 Hb_000649_300 0.2210867258 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
4 Hb_000320_460 0.2219277227 - - PREDICTED: uncharacterized protein LOC105650098 [Jatropha curcas]
5 Hb_002793_060 0.2241163891 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Populus euphratica]
6 Hb_001488_210 0.2247887778 - - PREDICTED: protein RIK [Jatropha curcas]
7 Hb_069841_010 0.2249787278 - - resistance protein [Quercus suber]
8 Hb_001196_080 0.2251873644 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
9 Hb_010368_080 0.2263724855 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
10 Hb_032202_050 0.2265138912 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
11 Hb_020178_050 0.2279407845 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
12 Hb_001481_010 0.2284840097 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
13 Hb_012305_140 0.2286003507 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
14 Hb_002988_030 0.2289974168 - - hypothetical protein EUGRSUZ_K02073 [Eucalyptus grandis]
15 Hb_001409_050 0.2301916329 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_002482_030 0.2302685255 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
17 Hb_000692_120 0.2317855478 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
18 Hb_005568_130 0.232165233 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
19 Hb_002910_010 0.2328647821 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
20 Hb_000613_220 0.2335475104 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]

Gene co-expression network

sample Hb_118453_010 Hb_118453_010 Hb_003216_050 Hb_003216_050 Hb_118453_010--Hb_003216_050 Hb_000649_300 Hb_000649_300 Hb_118453_010--Hb_000649_300 Hb_000320_460 Hb_000320_460 Hb_118453_010--Hb_000320_460 Hb_002793_060 Hb_002793_060 Hb_118453_010--Hb_002793_060 Hb_001488_210 Hb_001488_210 Hb_118453_010--Hb_001488_210 Hb_069841_010 Hb_069841_010 Hb_118453_010--Hb_069841_010 Hb_005568_130 Hb_005568_130 Hb_003216_050--Hb_005568_130 Hb_001662_170 Hb_001662_170 Hb_003216_050--Hb_001662_170 Hb_001053_200 Hb_001053_200 Hb_003216_050--Hb_001053_200 Hb_008103_100 Hb_008103_100 Hb_003216_050--Hb_008103_100 Hb_001409_050 Hb_001409_050 Hb_003216_050--Hb_001409_050 Hb_003216_050--Hb_000649_300 Hb_005496_160 Hb_005496_160 Hb_000649_300--Hb_005496_160 Hb_002874_170 Hb_002874_170 Hb_000649_300--Hb_002874_170 Hb_001951_240 Hb_001951_240 Hb_000649_300--Hb_001951_240 Hb_000649_300--Hb_001053_200 Hb_002910_010 Hb_002910_010 Hb_000649_300--Hb_002910_010 Hb_002073_020 Hb_002073_020 Hb_000649_300--Hb_002073_020 Hb_011202_030 Hb_011202_030 Hb_000320_460--Hb_011202_030 Hb_003895_020 Hb_003895_020 Hb_000320_460--Hb_003895_020 Hb_003120_070 Hb_003120_070 Hb_000320_460--Hb_003120_070 Hb_000732_070 Hb_000732_070 Hb_000320_460--Hb_000732_070 Hb_000751_140 Hb_000751_140 Hb_000320_460--Hb_000751_140 Hb_155159_010 Hb_155159_010 Hb_000320_460--Hb_155159_010 Hb_001489_120 Hb_001489_120 Hb_002793_060--Hb_001489_120 Hb_004032_310 Hb_004032_310 Hb_002793_060--Hb_004032_310 Hb_002793_060--Hb_001662_170 Hb_002534_050 Hb_002534_050 Hb_002793_060--Hb_002534_050 Hb_000071_140 Hb_000071_140 Hb_002793_060--Hb_000071_140 Hb_002774_150 Hb_002774_150 Hb_002793_060--Hb_002774_150 Hb_010775_010 Hb_010775_010 Hb_001488_210--Hb_010775_010 Hb_002553_010 Hb_002553_010 Hb_001488_210--Hb_002553_010 Hb_000300_250 Hb_000300_250 Hb_001488_210--Hb_000300_250 Hb_002686_410 Hb_002686_410 Hb_001488_210--Hb_002686_410 Hb_003216_060 Hb_003216_060 Hb_001488_210--Hb_003216_060 Hb_000453_230 Hb_000453_230 Hb_001488_210--Hb_000453_230 Hb_001196_080 Hb_001196_080 Hb_069841_010--Hb_001196_080 Hb_069841_010--Hb_000732_070 Hb_000997_150 Hb_000997_150 Hb_069841_010--Hb_000997_150 Hb_000988_030 Hb_000988_030 Hb_069841_010--Hb_000988_030 Hb_000671_060 Hb_000671_060 Hb_069841_010--Hb_000671_060 Hb_001079_030 Hb_001079_030 Hb_069841_010--Hb_001079_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0652109 0.814706 0.533411 0.0941646 0.188621 0.256237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.120433 0 0.201935 0.220915

CAGE analysis