Hb_032634_010

Information

Type -
Description -
Location Contig32634: 567-2012
Sequence    

Annotation

kegg
ID pda:103696510
description uncharacterized LOC103696510
nr
ID XP_009764284.1
description PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032634_010 0.0 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
2 Hb_173121_010 0.2544795334 - - -
3 Hb_019617_010 0.2845622703 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_005822_030 0.2900554558 - - -
5 Hb_081703_020 0.313143053 - - -
6 Hb_003927_060 0.3419577917 - - hypothetical protein JCGZ_05636 [Jatropha curcas]
7 Hb_000608_430 0.3444417378 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
8 Hb_155720_010 0.347814496 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
9 Hb_007904_010 0.3513339031 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
10 Hb_003417_070 0.3534216824 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
11 Hb_004125_120 0.3607456476 - - protein phosphatase 2c, putative [Ricinus communis]
12 Hb_153636_010 0.3732426979 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
13 Hb_003605_010 0.3824779744 - - -
14 Hb_116020_010 0.3888592001 - - Uncharacterized protein TCM_023639 [Theobroma cacao]
15 Hb_002253_090 0.3897713883 - - Chitinase 1 precursor, putative [Ricinus communis]
16 Hb_003228_090 0.4033214899 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105637258 [Jatropha curcas]
17 Hb_010452_010 0.403660686 - - PREDICTED: uncharacterized protein LOC104232369 [Nicotiana sylvestris]
18 Hb_015778_020 0.4038730006 - - Putative methyltransferase family protein [Solanum demissum]
19 Hb_000018_050 0.4061769292 - - PREDICTED: uncharacterized protein LOC104899363 [Beta vulgaris subsp. vulgaris]
20 Hb_000272_040 0.4071264171 - - -

Gene co-expression network

sample Hb_032634_010 Hb_032634_010 Hb_173121_010 Hb_173121_010 Hb_032634_010--Hb_173121_010 Hb_019617_010 Hb_019617_010 Hb_032634_010--Hb_019617_010 Hb_005822_030 Hb_005822_030 Hb_032634_010--Hb_005822_030 Hb_081703_020 Hb_081703_020 Hb_032634_010--Hb_081703_020 Hb_003927_060 Hb_003927_060 Hb_032634_010--Hb_003927_060 Hb_000608_430 Hb_000608_430 Hb_032634_010--Hb_000608_430 Hb_003605_010 Hb_003605_010 Hb_173121_010--Hb_003605_010 Hb_002235_290 Hb_002235_290 Hb_173121_010--Hb_002235_290 Hb_173121_010--Hb_019617_010 Hb_067730_010 Hb_067730_010 Hb_173121_010--Hb_067730_010 Hb_155720_010 Hb_155720_010 Hb_173121_010--Hb_155720_010 Hb_019617_010--Hb_155720_010 Hb_019617_010--Hb_005822_030 Hb_019617_010--Hb_003605_010 Hb_000018_050 Hb_000018_050 Hb_019617_010--Hb_000018_050 Hb_007904_010 Hb_007904_010 Hb_005822_030--Hb_007904_010 Hb_005822_030--Hb_000018_050 Hb_079902_030 Hb_079902_030 Hb_005822_030--Hb_079902_030 Hb_002042_240 Hb_002042_240 Hb_005822_030--Hb_002042_240 Hb_003417_070 Hb_003417_070 Hb_081703_020--Hb_003417_070 Hb_153636_010 Hb_153636_010 Hb_081703_020--Hb_153636_010 Hb_015778_020 Hb_015778_020 Hb_081703_020--Hb_015778_020 Hb_010452_010 Hb_010452_010 Hb_081703_020--Hb_010452_010 Hb_003228_090 Hb_003228_090 Hb_081703_020--Hb_003228_090 Hb_003927_060--Hb_003605_010 Hb_000976_200 Hb_000976_200 Hb_003927_060--Hb_000976_200 Hb_007064_030 Hb_007064_030 Hb_003927_060--Hb_007064_030 Hb_083663_010 Hb_083663_010 Hb_003927_060--Hb_083663_010 Hb_095449_010 Hb_095449_010 Hb_003927_060--Hb_095449_010 Hb_126044_010 Hb_126044_010 Hb_003927_060--Hb_126044_010 Hb_004125_120 Hb_004125_120 Hb_000608_430--Hb_004125_120 Hb_019837_020 Hb_019837_020 Hb_000608_430--Hb_019837_020 Hb_114271_010 Hb_114271_010 Hb_000608_430--Hb_114271_010 Hb_142663_020 Hb_142663_020 Hb_000608_430--Hb_142663_020 Hb_032260_110 Hb_032260_110 Hb_000608_430--Hb_032260_110 Hb_000116_070 Hb_000116_070 Hb_000608_430--Hb_000116_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0471605 0.0120435 0.0114235 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0260686 0 0 0.0544161

CAGE analysis