Hb_002042_240

Information

Type -
Description -
Location Contig2042: 228615-232571
Sequence    

Annotation

kegg
ID egr:104417177
description uncharacterized LOC104417177
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID Q01JF4
description H0502G05.12 protein OS=Oryza sativa GN=H0502G05.12 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002042_240 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_002850_030 0.0267673581 - - -
3 Hb_079902_030 0.0308326874 - - conserved hypothetical protein [Ricinus communis]
4 Hb_016354_010 0.0521413394 - - -
5 Hb_012235_010 0.0879753097 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
6 Hb_012807_090 0.1412769039 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
7 Hb_004951_050 0.1489430709 - - conserved hypothetical protein [Ricinus communis]
8 Hb_014929_010 0.1526768054 - - -
9 Hb_000143_070 0.1608262173 - - -
10 Hb_000300_460 0.167436293 - - Mavicyanin, putative [Ricinus communis]
11 Hb_003279_010 0.1706110508 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
12 Hb_121954_010 0.1708772586 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
13 Hb_074822_010 0.1709533553 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
14 Hb_005379_010 0.1726955173 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_000646_030 0.1732186757 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_025662_020 0.1732513073 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_003797_030 0.173385817 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_000329_460 0.2086625982 - - PREDICTED: protein transport protein Sec61 subunit beta [Cucumis sativus]
19 Hb_004018_010 0.2204512343 - - PREDICTED: uncharacterized protein LOC105784835 [Gossypium raimondii]
20 Hb_038508_010 0.2278611896 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]

Gene co-expression network

sample Hb_002042_240 Hb_002042_240 Hb_002850_030 Hb_002850_030 Hb_002042_240--Hb_002850_030 Hb_079902_030 Hb_079902_030 Hb_002042_240--Hb_079902_030 Hb_016354_010 Hb_016354_010 Hb_002042_240--Hb_016354_010 Hb_012235_010 Hb_012235_010 Hb_002042_240--Hb_012235_010 Hb_012807_090 Hb_012807_090 Hb_002042_240--Hb_012807_090 Hb_004951_050 Hb_004951_050 Hb_002042_240--Hb_004951_050 Hb_002850_030--Hb_079902_030 Hb_002850_030--Hb_016354_010 Hb_002850_030--Hb_012235_010 Hb_002850_030--Hb_012807_090 Hb_002850_030--Hb_004951_050 Hb_079902_030--Hb_016354_010 Hb_079902_030--Hb_012235_010 Hb_079902_030--Hb_012807_090 Hb_079902_030--Hb_004951_050 Hb_016354_010--Hb_012235_010 Hb_016354_010--Hb_012807_090 Hb_016354_010--Hb_004951_050 Hb_038508_010 Hb_038508_010 Hb_012235_010--Hb_038508_010 Hb_012235_010--Hb_012807_090 Hb_012807_090--Hb_004951_050 Hb_014929_010 Hb_014929_010 Hb_012807_090--Hb_014929_010 Hb_000143_070 Hb_000143_070 Hb_012807_090--Hb_000143_070 Hb_000300_460 Hb_000300_460 Hb_012807_090--Hb_000300_460 Hb_003279_010 Hb_003279_010 Hb_012807_090--Hb_003279_010 Hb_121954_010 Hb_121954_010 Hb_012807_090--Hb_121954_010 Hb_004951_050--Hb_014929_010 Hb_004951_050--Hb_000143_070 Hb_004951_050--Hb_000300_460 Hb_004951_050--Hb_003279_010 Hb_004951_050--Hb_121954_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0134742 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0207877

CAGE analysis