Hb_019837_020

Information

Type -
Description -
Location Contig19837: 18699-19565
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19914: 17539-20541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019837_020 0.0 - - -
2 Hb_004125_120 0.2051863827 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_000608_430 0.2118714116 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
4 Hb_000205_230 0.2225302026 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
5 Hb_001148_060 0.2334116854 - - hypothetical protein JCGZ_00278 [Jatropha curcas]
6 Hb_005183_040 0.2343539005 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
7 Hb_010098_060 0.2363502267 - - PREDICTED: BTB/POZ domain-containing protein At5g17580 [Jatropha curcas]
8 Hb_001250_080 0.2392524674 - - PREDICTED: F-box/kelch-repeat protein At1g23390 [Jatropha curcas]
9 Hb_172632_130 0.2398549317 - - hypothetical protein JCGZ_22584 [Jatropha curcas]
10 Hb_002835_280 0.2422672036 - - PREDICTED: L-type lectin-domain containing receptor kinase S.1 [Jatropha curcas]
11 Hb_002759_100 0.2437129576 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
12 Hb_164945_020 0.2445562954 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
13 Hb_010583_030 0.244721585 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
14 Hb_002542_060 0.2462421157 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
15 Hb_000679_030 0.2481708646 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5 [Jatropha curcas]
16 Hb_003687_010 0.2512682415 - - Cysteine-rich RLK 29, putative [Theobroma cacao]
17 Hb_001153_100 0.2529533292 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
18 Hb_004108_190 0.2562721828 - - PREDICTED: protein catecholamines up-like [Jatropha curcas]
19 Hb_005305_120 0.2568223348 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
20 Hb_001339_030 0.2573158169 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_019837_020 Hb_019837_020 Hb_004125_120 Hb_004125_120 Hb_019837_020--Hb_004125_120 Hb_000608_430 Hb_000608_430 Hb_019837_020--Hb_000608_430 Hb_000205_230 Hb_000205_230 Hb_019837_020--Hb_000205_230 Hb_001148_060 Hb_001148_060 Hb_019837_020--Hb_001148_060 Hb_005183_040 Hb_005183_040 Hb_019837_020--Hb_005183_040 Hb_010098_060 Hb_010098_060 Hb_019837_020--Hb_010098_060 Hb_004125_120--Hb_000608_430 Hb_000330_030 Hb_000330_030 Hb_004125_120--Hb_000330_030 Hb_002759_100 Hb_002759_100 Hb_004125_120--Hb_002759_100 Hb_004125_120--Hb_000205_230 Hb_000856_130 Hb_000856_130 Hb_004125_120--Hb_000856_130 Hb_114271_010 Hb_114271_010 Hb_000608_430--Hb_114271_010 Hb_142663_020 Hb_142663_020 Hb_000608_430--Hb_142663_020 Hb_032260_110 Hb_032260_110 Hb_000608_430--Hb_032260_110 Hb_000116_070 Hb_000116_070 Hb_000608_430--Hb_000116_070 Hb_003177_090 Hb_003177_090 Hb_000205_230--Hb_003177_090 Hb_049293_010 Hb_049293_010 Hb_000205_230--Hb_049293_010 Hb_001195_250 Hb_001195_250 Hb_000205_230--Hb_001195_250 Hb_001538_020 Hb_001538_020 Hb_000205_230--Hb_001538_020 Hb_002099_060 Hb_002099_060 Hb_000205_230--Hb_002099_060 Hb_000757_020 Hb_000757_020 Hb_000205_230--Hb_000757_020 Hb_001148_060--Hb_002759_100 Hb_005305_120 Hb_005305_120 Hb_001148_060--Hb_005305_120 Hb_172632_130 Hb_172632_130 Hb_001148_060--Hb_172632_130 Hb_021409_070 Hb_021409_070 Hb_001148_060--Hb_021409_070 Hb_000270_830 Hb_000270_830 Hb_001148_060--Hb_000270_830 Hb_007793_050 Hb_007793_050 Hb_001148_060--Hb_007793_050 Hb_164945_020 Hb_164945_020 Hb_005183_040--Hb_164945_020 Hb_002636_070 Hb_002636_070 Hb_005183_040--Hb_002636_070 Hb_000917_210 Hb_000917_210 Hb_005183_040--Hb_000917_210 Hb_000959_010 Hb_000959_010 Hb_005183_040--Hb_000959_010 Hb_011242_010 Hb_011242_010 Hb_005183_040--Hb_011242_010 Hb_003145_010 Hb_003145_010 Hb_005183_040--Hb_003145_010 Hb_003462_080 Hb_003462_080 Hb_010098_060--Hb_003462_080 Hb_010098_060--Hb_001148_060 Hb_001864_080 Hb_001864_080 Hb_010098_060--Hb_001864_080 Hb_000246_130 Hb_000246_130 Hb_010098_060--Hb_000246_130 Hb_000221_090 Hb_000221_090 Hb_010098_060--Hb_000221_090 Hb_116702_010 Hb_116702_010 Hb_010098_060--Hb_116702_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120041 0.1493 0.157615 0.280075 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0728617 0 0.0595653 0.284528

CAGE analysis