Hb_004125_120

Information

Type -
Description -
Location Contig4125: 74559-76048
Sequence    

Annotation

kegg
ID rcu:RCOM_1169120
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002528831.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q9LW60
description Putative protein phosphatase 2C-like protein 44 OS=Arabidopsis thaliana GN=At3g23360 PE=5 SV=1
trembl
ID B9SS62
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_1169120 PE=4 SV=1
Gene Ontology
ID GO:0004721
description protein phosphatase 2c-like protein 44

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004125_120 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_000608_430 0.1870405924 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
3 Hb_019837_020 0.2051863827 - - -
4 Hb_000330_030 0.2807879269 - - PREDICTED: uncharacterized protein LOC105633814 [Jatropha curcas]
5 Hb_002759_100 0.2854614548 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
6 Hb_000205_230 0.2927224174 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
7 Hb_000856_130 0.2932263988 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
8 Hb_032260_110 0.2967881606 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000272_040 0.2999391002 - - -
10 Hb_001148_060 0.3025171844 - - hypothetical protein JCGZ_00278 [Jatropha curcas]
11 Hb_033642_050 0.3051942218 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 4-like [Jatropha curcas]
12 Hb_009710_030 0.3080360343 - - -
13 Hb_010583_030 0.3099686642 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
14 Hb_003687_010 0.3131161852 - - Cysteine-rich RLK 29, putative [Theobroma cacao]
15 Hb_172632_130 0.3177640218 - - hypothetical protein JCGZ_22584 [Jatropha curcas]
16 Hb_000370_040 0.3237699842 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
17 Hb_010098_060 0.3242304804 - - PREDICTED: BTB/POZ domain-containing protein At5g17580 [Jatropha curcas]
18 Hb_110558_020 0.327724447 - - PREDICTED: uncharacterized protein LOC105641876 [Jatropha curcas]
19 Hb_003906_060 0.3286790716 - - hypothetical protein VITISV_022975 [Vitis vinifera]
20 Hb_000665_070 0.3298576008 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004125_120 Hb_004125_120 Hb_000608_430 Hb_000608_430 Hb_004125_120--Hb_000608_430 Hb_019837_020 Hb_019837_020 Hb_004125_120--Hb_019837_020 Hb_000330_030 Hb_000330_030 Hb_004125_120--Hb_000330_030 Hb_002759_100 Hb_002759_100 Hb_004125_120--Hb_002759_100 Hb_000205_230 Hb_000205_230 Hb_004125_120--Hb_000205_230 Hb_000856_130 Hb_000856_130 Hb_004125_120--Hb_000856_130 Hb_000608_430--Hb_019837_020 Hb_114271_010 Hb_114271_010 Hb_000608_430--Hb_114271_010 Hb_142663_020 Hb_142663_020 Hb_000608_430--Hb_142663_020 Hb_032260_110 Hb_032260_110 Hb_000608_430--Hb_032260_110 Hb_000116_070 Hb_000116_070 Hb_000608_430--Hb_000116_070 Hb_019837_020--Hb_000205_230 Hb_001148_060 Hb_001148_060 Hb_019837_020--Hb_001148_060 Hb_005183_040 Hb_005183_040 Hb_019837_020--Hb_005183_040 Hb_010098_060 Hb_010098_060 Hb_019837_020--Hb_010098_060 Hb_003673_040 Hb_003673_040 Hb_000330_030--Hb_003673_040 Hb_001496_130 Hb_001496_130 Hb_000330_030--Hb_001496_130 Hb_012506_070 Hb_012506_070 Hb_000330_030--Hb_012506_070 Hb_000856_060 Hb_000856_060 Hb_000330_030--Hb_000856_060 Hb_000690_150 Hb_000690_150 Hb_000330_030--Hb_000690_150 Hb_050959_010 Hb_050959_010 Hb_000330_030--Hb_050959_010 Hb_005305_120 Hb_005305_120 Hb_002759_100--Hb_005305_120 Hb_002759_100--Hb_001148_060 Hb_003687_010 Hb_003687_010 Hb_002759_100--Hb_003687_010 Hb_000270_830 Hb_000270_830 Hb_002759_100--Hb_000270_830 Hb_003581_130 Hb_003581_130 Hb_002759_100--Hb_003581_130 Hb_011310_150 Hb_011310_150 Hb_002759_100--Hb_011310_150 Hb_003177_090 Hb_003177_090 Hb_000205_230--Hb_003177_090 Hb_049293_010 Hb_049293_010 Hb_000205_230--Hb_049293_010 Hb_001195_250 Hb_001195_250 Hb_000205_230--Hb_001195_250 Hb_001538_020 Hb_001538_020 Hb_000205_230--Hb_001538_020 Hb_002099_060 Hb_002099_060 Hb_000205_230--Hb_002099_060 Hb_000757_020 Hb_000757_020 Hb_000205_230--Hb_000757_020 Hb_004864_010 Hb_004864_010 Hb_000856_130--Hb_004864_010 Hb_021443_050 Hb_021443_050 Hb_000856_130--Hb_021443_050 Hb_002400_080 Hb_002400_080 Hb_000856_130--Hb_002400_080 Hb_001497_040 Hb_001497_040 Hb_000856_130--Hb_001497_040 Hb_003913_040 Hb_003913_040 Hb_000856_130--Hb_003913_040 Hb_005743_030 Hb_005743_030 Hb_000856_130--Hb_005743_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0736107 0.0451589 0.0389602 0.041454 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0442635 0 0.0356777 0.0899783

CAGE analysis