Hb_003687_010

Information

Type -
Description -
Location Contig3687: 9337-12265
Sequence    

Annotation

kegg
ID tcc:TCM_020925
description Cysteine-rich RLK 29, putative
nr
ID XP_007035165.1
description Cysteine-rich RLK 29, putative [Theobroma cacao]
swissprot
ID Q8S9L6
description Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana GN=CRK29 PE=2 SV=1
trembl
ID A0A061EML7
description Cysteine-rich RLK 29, putative OS=Theobroma cacao GN=TCM_020925 PE=3 SV=1
Gene Ontology
ID GO:0004672
description cysteine-rich receptor-like protein kinase 29-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37901: 11007-11388 , PASA_asmbl_37902: 11735-11980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_010 0.0 - - Cysteine-rich RLK 29, putative [Theobroma cacao]
2 Hb_025045_010 0.1319163632 - - catalytic, putative [Ricinus communis]
3 Hb_001484_090 0.1341305674 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
4 Hb_029748_020 0.1386814293 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_002099_060 0.1404835178 - - Protein AFR, putative [Ricinus communis]
6 Hb_000366_030 0.1442683262 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Jatropha curcas]
7 Hb_002759_100 0.1446295322 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
8 Hb_003912_080 0.1447812938 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
9 Hb_002968_030 0.1456494108 - - Pectinesterase-1 precursor, putative [Ricinus communis]
10 Hb_001969_130 0.1475051357 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
11 Hb_001195_250 0.1475259615 - - lrr receptor protein kinase, putative [Ricinus communis]
12 Hb_000175_270 0.1486665473 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
13 Hb_052117_010 0.1491111196 - - kinase, putative [Ricinus communis]
14 Hb_000221_180 0.1516650916 - - VQ motif-containing family protein [Populus trichocarpa]
15 Hb_000270_830 0.1529999398 - - aldehyde dehydrogenase, putative [Ricinus communis]
16 Hb_001430_100 0.1536856387 - - cytochrome P450, putative [Ricinus communis]
17 Hb_029695_120 0.155473441 - - hypothetical protein POPTR_0002s05320g [Populus trichocarpa]
18 Hb_187005_010 0.1558592795 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
19 Hb_001269_050 0.1565989639 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
20 Hb_002888_040 0.1570881695 - - hypothetical protein B456_009G267200 [Gossypium raimondii]

Gene co-expression network

sample Hb_003687_010 Hb_003687_010 Hb_025045_010 Hb_025045_010 Hb_003687_010--Hb_025045_010 Hb_001484_090 Hb_001484_090 Hb_003687_010--Hb_001484_090 Hb_029748_020 Hb_029748_020 Hb_003687_010--Hb_029748_020 Hb_002099_060 Hb_002099_060 Hb_003687_010--Hb_002099_060 Hb_000366_030 Hb_000366_030 Hb_003687_010--Hb_000366_030 Hb_002759_100 Hb_002759_100 Hb_003687_010--Hb_002759_100 Hb_001821_060 Hb_001821_060 Hb_025045_010--Hb_001821_060 Hb_013968_010 Hb_013968_010 Hb_025045_010--Hb_013968_010 Hb_002026_030 Hb_002026_030 Hb_025045_010--Hb_002026_030 Hb_003912_080 Hb_003912_080 Hb_025045_010--Hb_003912_080 Hb_007765_130 Hb_007765_130 Hb_025045_010--Hb_007765_130 Hb_002888_040 Hb_002888_040 Hb_025045_010--Hb_002888_040 Hb_029695_120 Hb_029695_120 Hb_001484_090--Hb_029695_120 Hb_002809_160 Hb_002809_160 Hb_001484_090--Hb_002809_160 Hb_001702_050 Hb_001702_050 Hb_001484_090--Hb_001702_050 Hb_009078_020 Hb_009078_020 Hb_001484_090--Hb_009078_020 Hb_001059_060 Hb_001059_060 Hb_001484_090--Hb_001059_060 Hb_011188_010 Hb_011188_010 Hb_001484_090--Hb_011188_010 Hb_000100_210 Hb_000100_210 Hb_029748_020--Hb_000100_210 Hb_000321_120 Hb_000321_120 Hb_029748_020--Hb_000321_120 Hb_001522_040 Hb_001522_040 Hb_029748_020--Hb_001522_040 Hb_029748_020--Hb_002099_060 Hb_000438_020 Hb_000438_020 Hb_029748_020--Hb_000438_020 Hb_155150_010 Hb_155150_010 Hb_029748_020--Hb_155150_010 Hb_002099_060--Hb_000438_020 Hb_005724_040 Hb_005724_040 Hb_002099_060--Hb_005724_040 Hb_004864_020 Hb_004864_020 Hb_002099_060--Hb_004864_020 Hb_000181_230 Hb_000181_230 Hb_002099_060--Hb_000181_230 Hb_000418_150 Hb_000418_150 Hb_002099_060--Hb_000418_150 Hb_001195_370 Hb_001195_370 Hb_000366_030--Hb_001195_370 Hb_000757_020 Hb_000757_020 Hb_000366_030--Hb_000757_020 Hb_001969_130 Hb_001969_130 Hb_000366_030--Hb_001969_130 Hb_049293_010 Hb_049293_010 Hb_000366_030--Hb_049293_010 Hb_000731_290 Hb_000731_290 Hb_000366_030--Hb_000731_290 Hb_011174_080 Hb_011174_080 Hb_000366_030--Hb_011174_080 Hb_005305_120 Hb_005305_120 Hb_002759_100--Hb_005305_120 Hb_001148_060 Hb_001148_060 Hb_002759_100--Hb_001148_060 Hb_000270_830 Hb_000270_830 Hb_002759_100--Hb_000270_830 Hb_003581_130 Hb_003581_130 Hb_002759_100--Hb_003581_130 Hb_011310_150 Hb_011310_150 Hb_002759_100--Hb_011310_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.520123 1.72169 1.06471 1.38581 0.071627 0.340496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0974632 0.191712 0.0362844 0.90062 2.10237

CAGE analysis