Hb_002759_100

Information

Type -
Description -
Location Contig2759: 85264-88923
Sequence    

Annotation

kegg
ID rcu:RCOM_0394330
description cyclin d, putative
nr
ID KDP21306.1
description hypothetical protein JCGZ_21777 [Jatropha curcas]
swissprot
ID P42751
description Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3
trembl
ID A0A067JBV1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21777 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin delta-1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28860: 86243-88811 , PASA_asmbl_28861: 85195-88888 , PASA_asmbl_28862: 87262-87524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002759_100 0.0 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
2 Hb_005305_120 0.1237884687 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
3 Hb_001148_060 0.1273207383 - - hypothetical protein JCGZ_00278 [Jatropha curcas]
4 Hb_003687_010 0.1446295322 - - Cysteine-rich RLK 29, putative [Theobroma cacao]
5 Hb_000270_830 0.1580057144 - - aldehyde dehydrogenase, putative [Ricinus communis]
6 Hb_003581_130 0.161595931 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
7 Hb_011310_150 0.1696521355 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
8 Hb_004052_110 0.1699389102 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
9 Hb_172632_130 0.1705847685 - - hypothetical protein JCGZ_22584 [Jatropha curcas]
10 Hb_001430_100 0.1709495286 - - cytochrome P450, putative [Ricinus communis]
11 Hb_002259_220 0.171581119 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
12 Hb_009862_020 0.1735126502 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
13 Hb_001969_130 0.1742386466 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
14 Hb_001998_210 0.1744034026 - - unnamed protein product [Coffea canephora]
15 Hb_009449_100 0.1762297657 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
16 Hb_003687_130 0.1762718446 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
17 Hb_001123_150 0.1764555434 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
18 Hb_003216_130 0.176732631 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
19 Hb_002835_280 0.1772857708 - - PREDICTED: L-type lectin-domain containing receptor kinase S.1 [Jatropha curcas]
20 Hb_002349_030 0.1789579499 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002759_100 Hb_002759_100 Hb_005305_120 Hb_005305_120 Hb_002759_100--Hb_005305_120 Hb_001148_060 Hb_001148_060 Hb_002759_100--Hb_001148_060 Hb_003687_010 Hb_003687_010 Hb_002759_100--Hb_003687_010 Hb_000270_830 Hb_000270_830 Hb_002759_100--Hb_000270_830 Hb_003581_130 Hb_003581_130 Hb_002759_100--Hb_003581_130 Hb_011310_150 Hb_011310_150 Hb_002759_100--Hb_011310_150 Hb_002835_280 Hb_002835_280 Hb_005305_120--Hb_002835_280 Hb_000861_100 Hb_000861_100 Hb_005305_120--Hb_000861_100 Hb_001124_140 Hb_001124_140 Hb_005305_120--Hb_001124_140 Hb_009449_100 Hb_009449_100 Hb_005305_120--Hb_009449_100 Hb_005731_100 Hb_005731_100 Hb_005305_120--Hb_005731_100 Hb_001148_060--Hb_005305_120 Hb_172632_130 Hb_172632_130 Hb_001148_060--Hb_172632_130 Hb_021409_070 Hb_021409_070 Hb_001148_060--Hb_021409_070 Hb_001148_060--Hb_000270_830 Hb_007793_050 Hb_007793_050 Hb_001148_060--Hb_007793_050 Hb_025045_010 Hb_025045_010 Hb_003687_010--Hb_025045_010 Hb_001484_090 Hb_001484_090 Hb_003687_010--Hb_001484_090 Hb_029748_020 Hb_029748_020 Hb_003687_010--Hb_029748_020 Hb_002099_060 Hb_002099_060 Hb_003687_010--Hb_002099_060 Hb_000366_030 Hb_000366_030 Hb_003687_010--Hb_000366_030 Hb_000270_710 Hb_000270_710 Hb_000270_830--Hb_000270_710 Hb_000270_830--Hb_025045_010 Hb_000997_290 Hb_000997_290 Hb_000270_830--Hb_000997_290 Hb_027380_150 Hb_027380_150 Hb_000270_830--Hb_027380_150 Hb_001969_130 Hb_001969_130 Hb_000270_830--Hb_001969_130 Hb_000487_370 Hb_000487_370 Hb_000270_830--Hb_000487_370 Hb_000015_200 Hb_000015_200 Hb_003581_130--Hb_000015_200 Hb_000452_030 Hb_000452_030 Hb_003581_130--Hb_000452_030 Hb_000015_090 Hb_000015_090 Hb_003581_130--Hb_000015_090 Hb_000340_220 Hb_000340_220 Hb_003581_130--Hb_000340_220 Hb_002349_030 Hb_002349_030 Hb_003581_130--Hb_002349_030 Hb_000369_080 Hb_000369_080 Hb_003581_130--Hb_000369_080 Hb_166876_010 Hb_166876_010 Hb_011310_150--Hb_166876_010 Hb_002774_200 Hb_002774_200 Hb_011310_150--Hb_002774_200 Hb_001160_100 Hb_001160_100 Hb_011310_150--Hb_001160_100 Hb_002259_170 Hb_002259_170 Hb_011310_150--Hb_002259_170 Hb_001269_370 Hb_001269_370 Hb_011310_150--Hb_001269_370 Hb_000506_110 Hb_000506_110 Hb_011310_150--Hb_000506_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1784 37.1332 25.1426 32.0476 1.31559 2.81221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.59774 6.31401 3.61593 17.5434 39.2232

CAGE analysis