Hb_005183_040

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig5183: 20711-24635
Sequence    

Annotation

kegg
ID rcu:RCOM_1453510
description Disease resistance protein RPM1, putative (EC:3.1.3.16)
nr
ID XP_002513100.1
description Disease resistance protein RPM1, putative [Ricinus communis]
swissprot
ID Q9FJB5
description Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1
trembl
ID B9RGE8
description Disease resistance protein RPM1, putative OS=Ricinus communis GN=RCOM_1453510 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46585: 19392-19765
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005183_040 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
2 Hb_164945_020 0.1248083374 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
3 Hb_002636_070 0.1288542457 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
4 Hb_000917_210 0.1326974163 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000959_010 0.1331817122 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
6 Hb_011242_010 0.135232829 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
7 Hb_003145_010 0.1360413207 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
8 Hb_012132_020 0.1379308718 - - glutamine synthetase [Hevea brasiliensis]
9 Hb_005493_010 0.1405079295 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
10 Hb_003147_040 0.1409464163 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
11 Hb_031862_120 0.1412981463 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
12 Hb_003058_170 0.1443963636 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
13 Hb_000116_530 0.1449391364 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 3; Short=HMG-CoA reductase 3 [Hevea brasiliensis]
14 Hb_000237_160 0.1462895292 - - BEL1-like homeodomain protein 1 [Morus notabilis]
15 Hb_003097_220 0.1466910487 - - hypothetical protein POPTR_0001s06150g [Populus trichocarpa]
16 Hb_114917_010 0.1476102261 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
17 Hb_000272_030 0.1479818143 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
18 Hb_001046_030 0.1506059263 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_001486_100 0.1507998482 - - tubulin alpha chain, putative [Ricinus communis]
20 Hb_006414_010 0.1511207112 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]

Gene co-expression network

sample Hb_005183_040 Hb_005183_040 Hb_164945_020 Hb_164945_020 Hb_005183_040--Hb_164945_020 Hb_002636_070 Hb_002636_070 Hb_005183_040--Hb_002636_070 Hb_000917_210 Hb_000917_210 Hb_005183_040--Hb_000917_210 Hb_000959_010 Hb_000959_010 Hb_005183_040--Hb_000959_010 Hb_011242_010 Hb_011242_010 Hb_005183_040--Hb_011242_010 Hb_003145_010 Hb_003145_010 Hb_005183_040--Hb_003145_010 Hb_114917_010 Hb_114917_010 Hb_164945_020--Hb_114917_010 Hb_001369_390 Hb_001369_390 Hb_164945_020--Hb_001369_390 Hb_003058_170 Hb_003058_170 Hb_164945_020--Hb_003058_170 Hb_012132_020 Hb_012132_020 Hb_164945_020--Hb_012132_020 Hb_000679_030 Hb_000679_030 Hb_164945_020--Hb_000679_030 Hb_029223_010 Hb_029223_010 Hb_002636_070--Hb_029223_010 Hb_000680_130 Hb_000680_130 Hb_002636_070--Hb_000680_130 Hb_002713_060 Hb_002713_060 Hb_002636_070--Hb_002713_060 Hb_000705_040 Hb_000705_040 Hb_002636_070--Hb_000705_040 Hb_000270_640 Hb_000270_640 Hb_002636_070--Hb_000270_640 Hb_027337_130 Hb_027337_130 Hb_002636_070--Hb_027337_130 Hb_000594_130 Hb_000594_130 Hb_000917_210--Hb_000594_130 Hb_001486_100 Hb_001486_100 Hb_000917_210--Hb_001486_100 Hb_000130_480 Hb_000130_480 Hb_000917_210--Hb_000130_480 Hb_000917_210--Hb_003145_010 Hb_143629_200 Hb_143629_200 Hb_000917_210--Hb_143629_200 Hb_003607_140 Hb_003607_140 Hb_000917_210--Hb_003607_140 Hb_000959_010--Hb_143629_200 Hb_000959_010--Hb_001486_100 Hb_006040_170 Hb_006040_170 Hb_000959_010--Hb_006040_170 Hb_005305_030 Hb_005305_030 Hb_000959_010--Hb_005305_030 Hb_007237_010 Hb_007237_010 Hb_000959_010--Hb_007237_010 Hb_000237_160 Hb_000237_160 Hb_000959_010--Hb_000237_160 Hb_011242_010--Hb_003145_010 Hb_011242_010--Hb_114917_010 Hb_097335_010 Hb_097335_010 Hb_011242_010--Hb_097335_010 Hb_000979_260 Hb_000979_260 Hb_011242_010--Hb_000979_260 Hb_030827_010 Hb_030827_010 Hb_011242_010--Hb_030827_010 Hb_003145_010--Hb_030827_010 Hb_001417_060 Hb_001417_060 Hb_003145_010--Hb_001417_060 Hb_000627_050 Hb_000627_050 Hb_003145_010--Hb_000627_050 Hb_003145_010--Hb_029223_010 Hb_016924_010 Hb_016924_010 Hb_003145_010--Hb_016924_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0377051 0.420814 0.482244 0.699262 0.00472166 0.0136326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0809756 0.0172688 0.260201 1.19455

CAGE analysis