Hb_000116_070

Information

Type transcription factor
Description TF Family: C2H2
Location Contig116: 69763-72387
Sequence    

Annotation

kegg
ID rcu:RCOM_0873830
description hypothetical protein
nr
ID KDP43754.1
description hypothetical protein JCGZ_22381 [Jatropha curcas]
swissprot
ID O65499
description Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=2 SV=1
trembl
ID A0A067LHU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22381 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_070 0.0 transcription factor TF Family: C2H2 hypothetical protein JCGZ_22381 [Jatropha curcas]
2 Hb_002253_090 0.2056779107 - - Chitinase 1 precursor, putative [Ricinus communis]
3 Hb_002540_050 0.2711586361 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial [Jatropha curcas]
4 Hb_000608_430 0.2741608641 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
5 Hb_000272_040 0.2775678582 - - -
6 Hb_001411_040 0.2802276649 - - hypothetical protein VITISV_010644 [Vitis vinifera]
7 Hb_004088_050 0.2985633878 - - hypothetical protein VITISV_027174 [Vitis vinifera]
8 Hb_002498_300 0.3067724476 - - BnaC04g50140D [Brassica napus]
9 Hb_012098_090 0.3093971695 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
10 Hb_015531_020 0.3109776893 - - PREDICTED: uncharacterized protein LOC100267182 isoform X2 [Vitis vinifera]
11 Hb_001751_060 0.3136120155 - - PREDICTED: SEC12-like protein 1 [Jatropha curcas]
12 Hb_000107_180 0.3137485522 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
13 Hb_003940_050 0.3156334461 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
14 Hb_027472_100 0.3162204137 - - PREDICTED: uncharacterized protein LOC105646173 [Jatropha curcas]
15 Hb_000005_130 0.3177190541 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
16 Hb_000347_050 0.3187861671 - - PREDICTED: ABC transporter B family member 3-like [Jatropha curcas]
17 Hb_000676_060 0.3214835679 - - Sec14 cytosolic factor, putative [Ricinus communis]
18 Hb_000976_190 0.3220370146 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
19 Hb_003038_100 0.3224419052 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
20 Hb_003052_020 0.3225878742 - - PREDICTED: chaperonin 60 subunit beta 4, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_070 Hb_000116_070 Hb_002253_090 Hb_002253_090 Hb_000116_070--Hb_002253_090 Hb_002540_050 Hb_002540_050 Hb_000116_070--Hb_002540_050 Hb_000608_430 Hb_000608_430 Hb_000116_070--Hb_000608_430 Hb_000272_040 Hb_000272_040 Hb_000116_070--Hb_000272_040 Hb_001411_040 Hb_001411_040 Hb_000116_070--Hb_001411_040 Hb_004088_050 Hb_004088_050 Hb_000116_070--Hb_004088_050 Hb_000347_050 Hb_000347_050 Hb_002253_090--Hb_000347_050 Hb_002253_090--Hb_000272_040 Hb_141881_010 Hb_141881_010 Hb_002253_090--Hb_141881_010 Hb_000107_180 Hb_000107_180 Hb_002253_090--Hb_000107_180 Hb_002253_090--Hb_001411_040 Hb_004007_170 Hb_004007_170 Hb_002540_050--Hb_004007_170 Hb_002817_010 Hb_002817_010 Hb_002540_050--Hb_002817_010 Hb_001751_060 Hb_001751_060 Hb_002540_050--Hb_001751_060 Hb_000146_030 Hb_000146_030 Hb_002540_050--Hb_000146_030 Hb_002498_300 Hb_002498_300 Hb_002540_050--Hb_002498_300 Hb_000000_180 Hb_000000_180 Hb_002540_050--Hb_000000_180 Hb_004125_120 Hb_004125_120 Hb_000608_430--Hb_004125_120 Hb_019837_020 Hb_019837_020 Hb_000608_430--Hb_019837_020 Hb_114271_010 Hb_114271_010 Hb_000608_430--Hb_114271_010 Hb_142663_020 Hb_142663_020 Hb_000608_430--Hb_142663_020 Hb_032260_110 Hb_032260_110 Hb_000608_430--Hb_032260_110 Hb_011139_050 Hb_011139_050 Hb_000272_040--Hb_011139_050 Hb_122273_010 Hb_122273_010 Hb_000272_040--Hb_122273_010 Hb_000272_040--Hb_004125_120 Hb_016567_010 Hb_016567_010 Hb_000272_040--Hb_016567_010 Hb_001755_030 Hb_001755_030 Hb_001411_040--Hb_001755_030 Hb_000402_100 Hb_000402_100 Hb_001411_040--Hb_000402_100 Hb_001405_140 Hb_001405_140 Hb_001411_040--Hb_001405_140 Hb_000879_230 Hb_000879_230 Hb_001411_040--Hb_000879_230 Hb_001294_030 Hb_001294_030 Hb_001411_040--Hb_001294_030 Hb_007632_170 Hb_007632_170 Hb_001411_040--Hb_007632_170 Hb_000363_450 Hb_000363_450 Hb_004088_050--Hb_000363_450 Hb_000049_130 Hb_000049_130 Hb_004088_050--Hb_000049_130 Hb_001814_060 Hb_001814_060 Hb_004088_050--Hb_001814_060 Hb_181838_010 Hb_181838_010 Hb_004088_050--Hb_181838_010 Hb_002477_020 Hb_002477_020 Hb_004088_050--Hb_002477_020 Hb_003540_100 Hb_003540_100 Hb_004088_050--Hb_003540_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0310288 0 0.0475284 0.0241161 0 0.0158617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0278359 0 0.0111286 0.0579539

CAGE analysis