Hb_002540_050

Information

Type -
Description -
Location Contig2540: 51849-52301
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05180g
description POPTRDRAFT_777150; pentatricopeptide repeat-containing family protein
nr
ID XP_012073028.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial [Jatropha curcas]
swissprot
ID Q9LIC3
description Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1
trembl
ID B9II40
description Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0016s05180g PE=4 SV=1
Gene Ontology
ID GO:0005576
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26551: 53081-58440
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002540_050 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial [Jatropha curcas]
2 Hb_004007_170 0.2507319578 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
3 Hb_002817_010 0.2518785755 - - PREDICTED: uncharacterized protein LOC105630103 isoform X2 [Jatropha curcas]
4 Hb_001751_060 0.2524511471 - - PREDICTED: SEC12-like protein 1 [Jatropha curcas]
5 Hb_000146_030 0.2536981174 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
6 Hb_002498_300 0.2538710681 - - BnaC04g50140D [Brassica napus]
7 Hb_000000_180 0.2580441449 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
8 Hb_000500_350 0.2586579891 - - PREDICTED: uncharacterized protein LOC105649734 [Jatropha curcas]
9 Hb_001386_090 0.2591690608 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
10 Hb_001519_170 0.2621978018 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
11 Hb_002400_010 0.2649354863 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
12 Hb_004117_150 0.2654037708 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
13 Hb_012545_040 0.2669912691 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000005_130 0.2680804556 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
15 Hb_000116_070 0.2711586361 transcription factor TF Family: C2H2 hypothetical protein JCGZ_22381 [Jatropha curcas]
16 Hb_001343_120 0.2718395459 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000438_130 0.2720590427 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
18 Hb_000207_140 0.2733733602 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
19 Hb_004459_060 0.2740412801 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
20 Hb_004517_030 0.2744669604 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002540_050 Hb_002540_050 Hb_004007_170 Hb_004007_170 Hb_002540_050--Hb_004007_170 Hb_002817_010 Hb_002817_010 Hb_002540_050--Hb_002817_010 Hb_001751_060 Hb_001751_060 Hb_002540_050--Hb_001751_060 Hb_000146_030 Hb_000146_030 Hb_002540_050--Hb_000146_030 Hb_002498_300 Hb_002498_300 Hb_002540_050--Hb_002498_300 Hb_000000_180 Hb_000000_180 Hb_002540_050--Hb_000000_180 Hb_003470_100 Hb_003470_100 Hb_004007_170--Hb_003470_100 Hb_004117_150 Hb_004117_150 Hb_004007_170--Hb_004117_150 Hb_006681_020 Hb_006681_020 Hb_004007_170--Hb_006681_020 Hb_004007_170--Hb_000146_030 Hb_001047_180 Hb_001047_180 Hb_004007_170--Hb_001047_180 Hb_004855_070 Hb_004855_070 Hb_004007_170--Hb_004855_070 Hb_000207_140 Hb_000207_140 Hb_002817_010--Hb_000207_140 Hb_001343_120 Hb_001343_120 Hb_002817_010--Hb_001343_120 Hb_002435_090 Hb_002435_090 Hb_002817_010--Hb_002435_090 Hb_000028_150 Hb_000028_150 Hb_002817_010--Hb_000028_150 Hb_000816_210 Hb_000816_210 Hb_002817_010--Hb_000816_210 Hb_002540_060 Hb_002540_060 Hb_002817_010--Hb_002540_060 Hb_012180_060 Hb_012180_060 Hb_001751_060--Hb_012180_060 Hb_001751_060--Hb_002498_300 Hb_000076_250 Hb_000076_250 Hb_001751_060--Hb_000076_250 Hb_005000_060 Hb_005000_060 Hb_001751_060--Hb_005000_060 Hb_000169_070 Hb_000169_070 Hb_001751_060--Hb_000169_070 Hb_001386_090 Hb_001386_090 Hb_001751_060--Hb_001386_090 Hb_000146_030--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_000146_030--Hb_004459_060 Hb_002411_100 Hb_002411_100 Hb_000146_030--Hb_002411_100 Hb_000402_020 Hb_000402_020 Hb_000146_030--Hb_000402_020 Hb_000322_040 Hb_000322_040 Hb_000146_030--Hb_000322_040 Hb_004705_070 Hb_004705_070 Hb_002498_300--Hb_004705_070 Hb_126933_020 Hb_126933_020 Hb_002498_300--Hb_126933_020 Hb_150651_020 Hb_150651_020 Hb_002498_300--Hb_150651_020 Hb_004208_090 Hb_004208_090 Hb_002498_300--Hb_004208_090 Hb_002400_010 Hb_002400_010 Hb_002498_300--Hb_002400_010 Hb_000093_140 Hb_000093_140 Hb_002498_300--Hb_000093_140 Hb_012545_040 Hb_012545_040 Hb_000000_180--Hb_012545_040 Hb_001519_170 Hb_001519_170 Hb_000000_180--Hb_001519_170 Hb_000000_180--Hb_000146_030 Hb_011114_020 Hb_011114_020 Hb_000000_180--Hb_011114_020 Hb_001711_060 Hb_001711_060 Hb_000000_180--Hb_001711_060 Hb_000000_180--Hb_004459_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0674062 0 0.933488 0.172601 0.0680767 0.148733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.249243 0 0.10473 0.454836

CAGE analysis