Hb_002817_010

Information

Type -
Description -
Location Contig2817: 35554-40697
Sequence    

Annotation

kegg
ID rcu:RCOM_1449420
description xylulose kinase, putative (EC:2.7.1.17)
nr
ID XP_012067191.1
description PREDICTED: uncharacterized protein LOC105630103 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LCE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26752 PE=4 SV=1
Gene Ontology
ID GO:0004856
description probable glycerol kinase isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29474: 36242-36604 , PASA_asmbl_29476: 37843-38248
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002817_010 0.0 - - PREDICTED: uncharacterized protein LOC105630103 isoform X2 [Jatropha curcas]
2 Hb_000207_140 0.1606428003 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
3 Hb_001343_120 0.1720828161 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002435_090 0.1770978048 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
5 Hb_000028_150 0.1808279921 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
6 Hb_000816_210 0.1924176851 - - PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Jatropha curcas]
7 Hb_002540_060 0.1929963245 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
8 Hb_003095_100 0.1963737367 - - conserved hypothetical protein [Ricinus communis]
9 Hb_188739_010 0.1969752329 - - protein binding protein, putative [Ricinus communis]
10 Hb_000042_390 0.199813431 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
11 Hb_000347_140 0.2021235996 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_003992_050 0.202800954 - - delta 9 desaturase, putative [Ricinus communis]
13 Hb_012653_010 0.2028453561 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
14 Hb_001386_090 0.2048163232 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
15 Hb_000169_070 0.2060812711 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
16 Hb_002986_140 0.2067294921 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
17 Hb_007336_050 0.2069595074 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
18 Hb_029510_130 0.2072766939 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
19 Hb_003397_030 0.2102551553 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
20 Hb_001975_050 0.2125525082 - - Tyrosine-specific transport protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002817_010 Hb_002817_010 Hb_000207_140 Hb_000207_140 Hb_002817_010--Hb_000207_140 Hb_001343_120 Hb_001343_120 Hb_002817_010--Hb_001343_120 Hb_002435_090 Hb_002435_090 Hb_002817_010--Hb_002435_090 Hb_000028_150 Hb_000028_150 Hb_002817_010--Hb_000028_150 Hb_000816_210 Hb_000816_210 Hb_002817_010--Hb_000816_210 Hb_002540_060 Hb_002540_060 Hb_002817_010--Hb_002540_060 Hb_000207_140--Hb_002435_090 Hb_188739_010 Hb_188739_010 Hb_000207_140--Hb_188739_010 Hb_000207_140--Hb_001343_120 Hb_003992_050 Hb_003992_050 Hb_000207_140--Hb_003992_050 Hb_000207_140--Hb_000816_210 Hb_001975_050 Hb_001975_050 Hb_000207_140--Hb_001975_050 Hb_000042_390 Hb_000042_390 Hb_001343_120--Hb_000042_390 Hb_001343_120--Hb_002435_090 Hb_001343_120--Hb_001975_050 Hb_004218_050 Hb_004218_050 Hb_001343_120--Hb_004218_050 Hb_001343_120--Hb_002540_060 Hb_002435_090--Hb_188739_010 Hb_002435_090--Hb_003992_050 Hb_002435_090--Hb_001975_050 Hb_140360_010 Hb_140360_010 Hb_002435_090--Hb_140360_010 Hb_000028_150--Hb_002540_060 Hb_002986_140 Hb_002986_140 Hb_000028_150--Hb_002986_140 Hb_000028_150--Hb_001343_120 Hb_000028_150--Hb_002435_090 Hb_001442_050 Hb_001442_050 Hb_000028_150--Hb_001442_050 Hb_000500_330 Hb_000500_330 Hb_000028_150--Hb_000500_330 Hb_000816_210--Hb_002435_090 Hb_000816_210--Hb_001975_050 Hb_000438_130 Hb_000438_130 Hb_000816_210--Hb_000438_130 Hb_000816_210--Hb_188739_010 Hb_003430_040 Hb_003430_040 Hb_000816_210--Hb_003430_040 Hb_000110_240 Hb_000110_240 Hb_002540_060--Hb_000110_240 Hb_002540_060--Hb_000207_140 Hb_007479_010 Hb_007479_010 Hb_002540_060--Hb_007479_010 Hb_002540_060--Hb_002435_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.357786 0.0838263 3.58359 0.427527 0.0495446 0.255928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.180117 0.155431 0.222812 0.858951

CAGE analysis