Hb_001751_060

Information

Type -
Description -
Location Contig1751: 97655-102664
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23870g
description POPTRDRAFT_567716; transducin family protein
nr
ID XP_012090227.1
description PREDICTED: SEC12-like protein 1 [Jatropha curcas]
swissprot
ID Q8GYE0
description SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=1 SV=2
trembl
ID A0A067L9B9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01556 PE=4 SV=1
Gene Ontology
ID GO:0005737
description sec12-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001751_060 0.0 - - PREDICTED: SEC12-like protein 1 [Jatropha curcas]
2 Hb_012180_060 0.1519178448 - - peptidase, putative [Ricinus communis]
3 Hb_002498_300 0.1712895406 - - BnaC04g50140D [Brassica napus]
4 Hb_000076_250 0.1767027696 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005000_060 0.1813048711 - - PREDICTED: uncharacterized protein LOC105637867 [Jatropha curcas]
6 Hb_000169_070 0.1828026971 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
7 Hb_001386_090 0.182926827 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
8 Hb_034579_020 0.1839542669 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000792_050 0.1841266713 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_006130_020 0.1849689257 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
11 Hb_003020_250 0.1871891348 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
12 Hb_001343_120 0.1874209995 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001141_050 0.1879681755 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
14 Hb_000227_400 0.1883896542 - - lipoxygenase, putative [Ricinus communis]
15 Hb_005000_010 0.190881887 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
16 Hb_001793_020 0.1911984907 - - PREDICTED: uncharacterized protein LOC105628624 [Jatropha curcas]
17 Hb_002045_090 0.1915052925 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
18 Hb_000224_080 0.194198913 - - hypothetical protein RCOM_0510880 [Ricinus communis]
19 Hb_004440_070 0.1944359099 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Jatropha curcas]
20 Hb_014320_010 0.1960722792 - - PREDICTED: uncharacterized protein LOC105629932 [Jatropha curcas]

Gene co-expression network

sample Hb_001751_060 Hb_001751_060 Hb_012180_060 Hb_012180_060 Hb_001751_060--Hb_012180_060 Hb_002498_300 Hb_002498_300 Hb_001751_060--Hb_002498_300 Hb_000076_250 Hb_000076_250 Hb_001751_060--Hb_000076_250 Hb_005000_060 Hb_005000_060 Hb_001751_060--Hb_005000_060 Hb_000169_070 Hb_000169_070 Hb_001751_060--Hb_000169_070 Hb_001386_090 Hb_001386_090 Hb_001751_060--Hb_001386_090 Hb_034579_020 Hb_034579_020 Hb_012180_060--Hb_034579_020 Hb_000689_050 Hb_000689_050 Hb_012180_060--Hb_000689_050 Hb_012180_060--Hb_000076_250 Hb_004545_080 Hb_004545_080 Hb_012180_060--Hb_004545_080 Hb_007904_060 Hb_007904_060 Hb_012180_060--Hb_007904_060 Hb_014497_010 Hb_014497_010 Hb_012180_060--Hb_014497_010 Hb_004705_070 Hb_004705_070 Hb_002498_300--Hb_004705_070 Hb_126933_020 Hb_126933_020 Hb_002498_300--Hb_126933_020 Hb_150651_020 Hb_150651_020 Hb_002498_300--Hb_150651_020 Hb_004208_090 Hb_004208_090 Hb_002498_300--Hb_004208_090 Hb_002400_010 Hb_002400_010 Hb_002498_300--Hb_002400_010 Hb_000093_140 Hb_000093_140 Hb_002498_300--Hb_000093_140 Hb_000388_080 Hb_000388_080 Hb_000076_250--Hb_000388_080 Hb_003640_050 Hb_003640_050 Hb_000076_250--Hb_003640_050 Hb_000032_410 Hb_000032_410 Hb_000076_250--Hb_000032_410 Hb_000996_080 Hb_000996_080 Hb_000076_250--Hb_000996_080 Hb_003020_250 Hb_003020_250 Hb_000076_250--Hb_003020_250 Hb_000076_250--Hb_000689_050 Hb_001999_260 Hb_001999_260 Hb_005000_060--Hb_001999_260 Hb_000146_030 Hb_000146_030 Hb_005000_060--Hb_000146_030 Hb_148146_010 Hb_148146_010 Hb_005000_060--Hb_148146_010 Hb_005000_060--Hb_004208_090 Hb_006583_030 Hb_006583_030 Hb_005000_060--Hb_006583_030 Hb_050514_020 Hb_050514_020 Hb_005000_060--Hb_050514_020 Hb_003397_030 Hb_003397_030 Hb_000169_070--Hb_003397_030 Hb_000169_070--Hb_001386_090 Hb_006252_030 Hb_006252_030 Hb_000169_070--Hb_006252_030 Hb_000322_040 Hb_000322_040 Hb_000169_070--Hb_000322_040 Hb_003470_100 Hb_003470_100 Hb_000169_070--Hb_003470_100 Hb_004007_170 Hb_004007_170 Hb_000169_070--Hb_004007_170 Hb_001386_090--Hb_003397_030 Hb_000438_130 Hb_000438_130 Hb_001386_090--Hb_000438_130 Hb_001711_060 Hb_001711_060 Hb_001386_090--Hb_001711_060 Hb_004517_030 Hb_004517_030 Hb_001386_090--Hb_004517_030 Hb_000392_450 Hb_000392_450 Hb_001386_090--Hb_000392_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.280176 0.258443 1.98008 0.890008 0.0700999 0.243794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.268976 0.0624029 0.107839 0.971725

CAGE analysis