Hb_012180_060

Information

Type -
Description -
Location Contig12180: 84157-88212
Sequence    

Annotation

kegg
ID rcu:RCOM_0703020
description peptidase, putative (EC:1.3.1.74)
nr
ID XP_002524360.1
description peptidase, putative [Ricinus communis]
swissprot
ID O64481
description Subtilisin-like protease SBT2.5 OS=Arabidopsis thaliana GN=SBT2.5 PE=2 SV=1
trembl
ID B9SEE1
description Peptidase, putative OS=Ricinus communis GN=RCOM_0703020 PE=3 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06625: 81912-83253 , PASA_asmbl_06626: 85587-86019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012180_060 0.0 - - peptidase, putative [Ricinus communis]
2 Hb_034579_020 0.0907093785 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000689_050 0.1087209121 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000076_250 0.1104186201 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004545_080 0.1126096056 - - protein with unknown function [Ricinus communis]
6 Hb_007904_060 0.1137762787 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
7 Hb_014497_010 0.1203299544 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
8 Hb_003050_360 0.1207160055 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
9 Hb_003020_250 0.1217046319 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
10 Hb_000527_080 0.1243567875 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
11 Hb_000996_080 0.1246498573 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
12 Hb_003752_090 0.1255968534 - - chitinase, putative [Ricinus communis]
13 Hb_000357_070 0.1262342973 - - -
14 Hb_006130_020 0.1272824341 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
15 Hb_002701_070 0.1352989218 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
16 Hb_000025_540 0.1357591318 - - PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]
17 Hb_003175_070 0.1364818526 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
18 Hb_003994_080 0.1392847232 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
19 Hb_001180_010 0.1406504007 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
20 Hb_000152_440 0.140747487 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_012180_060 Hb_012180_060 Hb_034579_020 Hb_034579_020 Hb_012180_060--Hb_034579_020 Hb_000689_050 Hb_000689_050 Hb_012180_060--Hb_000689_050 Hb_000076_250 Hb_000076_250 Hb_012180_060--Hb_000076_250 Hb_004545_080 Hb_004545_080 Hb_012180_060--Hb_004545_080 Hb_007904_060 Hb_007904_060 Hb_012180_060--Hb_007904_060 Hb_014497_010 Hb_014497_010 Hb_012180_060--Hb_014497_010 Hb_000357_070 Hb_000357_070 Hb_034579_020--Hb_000357_070 Hb_003050_360 Hb_003050_360 Hb_034579_020--Hb_003050_360 Hb_034579_020--Hb_004545_080 Hb_002374_450 Hb_002374_450 Hb_034579_020--Hb_002374_450 Hb_003020_250 Hb_003020_250 Hb_034579_020--Hb_003020_250 Hb_000689_050--Hb_003050_360 Hb_005074_040 Hb_005074_040 Hb_000689_050--Hb_005074_040 Hb_000689_050--Hb_014497_010 Hb_000996_080 Hb_000996_080 Hb_000689_050--Hb_000996_080 Hb_006120_060 Hb_006120_060 Hb_000689_050--Hb_006120_060 Hb_000689_050--Hb_004545_080 Hb_000388_080 Hb_000388_080 Hb_000076_250--Hb_000388_080 Hb_003640_050 Hb_003640_050 Hb_000076_250--Hb_003640_050 Hb_000032_410 Hb_000032_410 Hb_000076_250--Hb_000032_410 Hb_000076_250--Hb_000996_080 Hb_000076_250--Hb_003020_250 Hb_000076_250--Hb_000689_050 Hb_004545_080--Hb_000032_410 Hb_000527_080 Hb_000527_080 Hb_004545_080--Hb_000527_080 Hb_004545_080--Hb_003050_360 Hb_002942_140 Hb_002942_140 Hb_004545_080--Hb_002942_140 Hb_003175_070 Hb_003175_070 Hb_004545_080--Hb_003175_070 Hb_005784_030 Hb_005784_030 Hb_007904_060--Hb_005784_030 Hb_158092_100 Hb_158092_100 Hb_007904_060--Hb_158092_100 Hb_000108_150 Hb_000108_150 Hb_007904_060--Hb_000108_150 Hb_006420_010 Hb_006420_010 Hb_007904_060--Hb_006420_010 Hb_007904_060--Hb_003020_250 Hb_003752_090 Hb_003752_090 Hb_007904_060--Hb_003752_090 Hb_014497_010--Hb_005074_040 Hb_008025_010 Hb_008025_010 Hb_014497_010--Hb_008025_010 Hb_000025_540 Hb_000025_540 Hb_014497_010--Hb_000025_540 Hb_002942_230 Hb_002942_230 Hb_014497_010--Hb_002942_230 Hb_001411_130 Hb_001411_130 Hb_014497_010--Hb_001411_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0838409 0.12088 0.778596 0.523257 0.0579235 0.103706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0191215 0.105323 0.0859153 0.155432 0.542765

CAGE analysis