Hb_000347_050

Information

Type -
Description -
Location Contig347: 72487-78467
Sequence    

Annotation

kegg
ID rcu:RCOM_0684690
description multidrug resistance protein 1, 2, putative (EC:3.6.3.44 3.6.3.31)
nr
ID XP_012068837.1
description PREDICTED: ABC transporter B family member 3-like [Jatropha curcas]
swissprot
ID Q9LJX0
description ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1
trembl
ID B9ST63
description Multidrug resistance protein 1, 2, putative OS=Ricinus communis GN=RCOM_0684690 PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter b family member 19-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_050 0.0 - - PREDICTED: ABC transporter B family member 3-like [Jatropha curcas]
2 Hb_002253_090 0.2366942207 - - Chitinase 1 precursor, putative [Ricinus communis]
3 Hb_000116_070 0.3187861671 transcription factor TF Family: C2H2 hypothetical protein JCGZ_22381 [Jatropha curcas]
4 Hb_173121_010 0.3460120925 - - -
5 Hb_000018_050 0.34658861 - - PREDICTED: uncharacterized protein LOC104899363 [Beta vulgaris subsp. vulgaris]
6 Hb_004143_030 0.3492471007 - - PREDICTED: chromosome-associated kinesin KIF4B [Jatropha curcas]
7 Hb_000049_220 0.3519622343 - - ammonium transporter, putative [Ricinus communis]
8 Hb_037790_010 0.3550386906 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
9 Hb_003940_050 0.3582916018 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
10 Hb_003994_310 0.3675331008 transcription factor TF Family: PHD conserved hypothetical protein [Ricinus communis]
11 Hb_027380_240 0.3841318506 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic [Jatropha curcas]
12 Hb_037281_010 0.3844926183 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
13 Hb_001411_040 0.3905637125 - - hypothetical protein VITISV_010644 [Vitis vinifera]
14 Hb_014720_130 0.3917842575 - - PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
15 Hb_002235_290 0.3938909643 - - PREDICTED: casparian strip membrane protein 5 [Jatropha curcas]
16 Hb_004994_370 0.3942945832 - - -
17 Hb_002540_050 0.3969352728 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial [Jatropha curcas]
18 Hb_000237_210 0.3974833938 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000272_040 0.3978001334 - - -
20 Hb_001706_030 0.3980419821 - - PREDICTED: uncharacterized protein LOC104880364 [Vitis vinifera]

Gene co-expression network

sample Hb_000347_050 Hb_000347_050 Hb_002253_090 Hb_002253_090 Hb_000347_050--Hb_002253_090 Hb_000116_070 Hb_000116_070 Hb_000347_050--Hb_000116_070 Hb_173121_010 Hb_173121_010 Hb_000347_050--Hb_173121_010 Hb_000018_050 Hb_000018_050 Hb_000347_050--Hb_000018_050 Hb_004143_030 Hb_004143_030 Hb_000347_050--Hb_004143_030 Hb_000049_220 Hb_000049_220 Hb_000347_050--Hb_000049_220 Hb_002253_090--Hb_000116_070 Hb_000272_040 Hb_000272_040 Hb_002253_090--Hb_000272_040 Hb_141881_010 Hb_141881_010 Hb_002253_090--Hb_141881_010 Hb_000107_180 Hb_000107_180 Hb_002253_090--Hb_000107_180 Hb_001411_040 Hb_001411_040 Hb_002253_090--Hb_001411_040 Hb_002540_050 Hb_002540_050 Hb_000116_070--Hb_002540_050 Hb_000608_430 Hb_000608_430 Hb_000116_070--Hb_000608_430 Hb_000116_070--Hb_000272_040 Hb_000116_070--Hb_001411_040 Hb_004088_050 Hb_004088_050 Hb_000116_070--Hb_004088_050 Hb_032634_010 Hb_032634_010 Hb_173121_010--Hb_032634_010 Hb_003605_010 Hb_003605_010 Hb_173121_010--Hb_003605_010 Hb_002235_290 Hb_002235_290 Hb_173121_010--Hb_002235_290 Hb_019617_010 Hb_019617_010 Hb_173121_010--Hb_019617_010 Hb_067730_010 Hb_067730_010 Hb_173121_010--Hb_067730_010 Hb_155720_010 Hb_155720_010 Hb_173121_010--Hb_155720_010 Hb_037790_010 Hb_037790_010 Hb_000018_050--Hb_037790_010 Hb_007904_010 Hb_007904_010 Hb_000018_050--Hb_007904_010 Hb_005822_030 Hb_005822_030 Hb_000018_050--Hb_005822_030 Hb_006212_030 Hb_006212_030 Hb_000018_050--Hb_006212_030 Hb_002374_130 Hb_002374_130 Hb_000018_050--Hb_002374_130 Hb_000018_050--Hb_019617_010 Hb_004143_030--Hb_000049_220 Hb_027380_240 Hb_027380_240 Hb_004143_030--Hb_027380_240 Hb_007504_030 Hb_007504_030 Hb_004143_030--Hb_007504_030 Hb_007317_170 Hb_007317_170 Hb_004143_030--Hb_007317_170 Hb_000603_270 Hb_000603_270 Hb_004143_030--Hb_000603_270 Hb_004738_060 Hb_004738_060 Hb_004143_030--Hb_004738_060 Hb_000049_220--Hb_007504_030 Hb_134546_010 Hb_134546_010 Hb_000049_220--Hb_134546_010 Hb_001257_150 Hb_001257_150 Hb_000049_220--Hb_001257_150 Hb_000049_220--Hb_027380_240 Hb_000189_400 Hb_000189_400 Hb_000049_220--Hb_000189_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00484127 0 0.00868682 0 0 0.00696308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00698417 0 0 0.0150018

CAGE analysis