Hb_134546_010

Information

Type -
Description -
Location Contig134546: 1637-2017
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06050g
description POPTRDRAFT_547856; protease inhibitor/seed storage/lipid transfer family protein
nr
ID XP_010999574.1
description PREDICTED: uncharacterized protein LOC105107372 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GM44
description Protease inhibitor/seed storage/lipid transfer family protein OS=Populus trichocarpa GN=POPTR_0001s06050g PE=4 SV=1
Gene Ontology
ID GO:0005576
description protease inhibitor seed storage lipid transfer family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134546_010 0.0 - - PREDICTED: uncharacterized protein LOC105107372 [Populus euphratica]
2 Hb_000608_330 0.1939739255 - - Zeamatin precursor, putative [Ricinus communis]
3 Hb_007242_030 0.2131207361 - - PREDICTED: methylesterase 3-like isoform X2 [Tarenaya hassleriana]
4 Hb_046615_030 0.2197618548 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
5 Hb_000189_400 0.2266602255 - - hypothetical protein CathTA2_0066 [Caldalkalibacillus thermarum TA2.A1]
6 Hb_000165_170 0.2293470384 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
7 Hb_001089_010 0.2337040673 - - PREDICTED: GDSL esterase/lipase 5-like [Jatropha curcas]
8 Hb_000115_040 0.237932391 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005337_010 0.2413141588 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
10 Hb_000815_110 0.243431924 - - RecName: Full=Casparian strip membrane protein 4; Short=RcCASP4 [Ricinus communis]
11 Hb_000049_220 0.2437203934 - - ammonium transporter, putative [Ricinus communis]
12 Hb_002762_010 0.2437617143 - - hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
13 Hb_061183_010 0.2438432233 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
14 Hb_007595_040 0.2440660821 - - ribosomal protein L2 (chloroplast) [Berberis bealei]
15 Hb_001946_230 0.2441438649 - - -
16 Hb_000313_160 0.2442737837 - - BnaC02g20570D [Brassica napus]
17 Hb_000337_020 0.2447538034 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
18 Hb_001281_030 0.2449244592 - - hypothetical protein POPTR_0010s18450g [Populus trichocarpa]
19 Hb_003020_320 0.2451457473 - - -
20 Hb_052469_020 0.2452709577 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Vitis vinifera]

Gene co-expression network

sample Hb_134546_010 Hb_134546_010 Hb_000608_330 Hb_000608_330 Hb_134546_010--Hb_000608_330 Hb_007242_030 Hb_007242_030 Hb_134546_010--Hb_007242_030 Hb_046615_030 Hb_046615_030 Hb_134546_010--Hb_046615_030 Hb_000189_400 Hb_000189_400 Hb_134546_010--Hb_000189_400 Hb_000165_170 Hb_000165_170 Hb_134546_010--Hb_000165_170 Hb_001089_010 Hb_001089_010 Hb_134546_010--Hb_001089_010 Hb_001390_080 Hb_001390_080 Hb_000608_330--Hb_001390_080 Hb_000628_010 Hb_000628_010 Hb_000608_330--Hb_000628_010 Hb_008643_050 Hb_008643_050 Hb_000608_330--Hb_008643_050 Hb_003228_090 Hb_003228_090 Hb_000608_330--Hb_003228_090 Hb_000115_040 Hb_000115_040 Hb_000608_330--Hb_000115_040 Hb_000627_010 Hb_000627_010 Hb_000608_330--Hb_000627_010 Hb_007242_030--Hb_000165_170 Hb_001946_230 Hb_001946_230 Hb_007242_030--Hb_001946_230 Hb_000313_160 Hb_000313_160 Hb_007242_030--Hb_000313_160 Hb_000337_020 Hb_000337_020 Hb_007242_030--Hb_000337_020 Hb_061183_010 Hb_061183_010 Hb_007242_030--Hb_061183_010 Hb_001281_030 Hb_001281_030 Hb_007242_030--Hb_001281_030 Hb_046615_030--Hb_000189_400 Hb_000047_100 Hb_000047_100 Hb_046615_030--Hb_000047_100 Hb_004837_230 Hb_004837_230 Hb_046615_030--Hb_004837_230 Hb_006665_020 Hb_006665_020 Hb_046615_030--Hb_006665_020 Hb_001433_080 Hb_001433_080 Hb_046615_030--Hb_001433_080 Hb_005605_010 Hb_005605_010 Hb_046615_030--Hb_005605_010 Hb_001338_130 Hb_001338_130 Hb_000189_400--Hb_001338_130 Hb_107373_010 Hb_107373_010 Hb_000189_400--Hb_107373_010 Hb_020805_050 Hb_020805_050 Hb_000189_400--Hb_020805_050 Hb_003921_010 Hb_003921_010 Hb_000189_400--Hb_003921_010 Hb_180985_010 Hb_180985_010 Hb_000189_400--Hb_180985_010 Hb_001736_010 Hb_001736_010 Hb_000165_170--Hb_001736_010 Hb_001823_010 Hb_001823_010 Hb_000165_170--Hb_001823_010 Hb_000165_170--Hb_003921_010 Hb_000003_490 Hb_000003_490 Hb_000165_170--Hb_000003_490 Hb_005245_110 Hb_005245_110 Hb_000165_170--Hb_005245_110 Hb_000002_140 Hb_000002_140 Hb_001089_010--Hb_000002_140 Hb_140249_020 Hb_140249_020 Hb_001089_010--Hb_140249_020 Hb_002162_020 Hb_002162_020 Hb_001089_010--Hb_002162_020 Hb_000815_110 Hb_000815_110 Hb_001089_010--Hb_000815_110 Hb_001089_010--Hb_001433_080 Hb_001089_010--Hb_000165_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.184496 0 0.825961 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0745575 1.18989

CAGE analysis