Hb_000189_400

Information

Type -
Description -
Location Contig189: 346471-347200
Sequence    

Annotation

kegg
ID mtr:MTR_2g006030
description hypothetical protein
nr
ID EGL81406.1
description hypothetical protein CathTA2_0066 [Caldalkalibacillus thermarum TA2.A1]
swissprot
ID -
description -
trembl
ID F5LB77
description Uncharacterized protein OS=Caldalkalibacillus thermarum TA2.A1 GN=CathTA2_0066 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18685: 346516-346929 , PASA_asmbl_18686: 345222-345574
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_400 0.0 - - hypothetical protein CathTA2_0066 [Caldalkalibacillus thermarum TA2.A1]
2 Hb_046615_030 0.116617755 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
3 Hb_001338_130 0.1433854348 - - hypothetical protein MTR_4g129340 [Medicago truncatula]
4 Hb_107373_010 0.1436201237 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
5 Hb_020805_050 0.1451347738 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
6 Hb_003921_010 0.1509344702 - - conserved hypothetical protein [Ricinus communis]
7 Hb_180985_010 0.1524537299 - - NDH-dependent cyclic electron flow 1 isoform 1 [Theobroma cacao]
8 Hb_005245_110 0.1570656297 - - hypothetical protein CISIN_1g0225141mg [Citrus sinensis]
9 Hb_010407_090 0.157231363 - - PREDICTED: aldo-keto reductase isoform X1 [Jatropha curcas]
10 Hb_004837_230 0.1595331342 - - unknown [Populus trichocarpa]
11 Hb_025325_010 0.1611912676 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
12 Hb_000115_020 0.1615806458 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
13 Hb_000261_470 0.164826933 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
14 Hb_160045_010 0.1671095946 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005605_010 0.1671651054 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
16 Hb_002249_090 0.1674843562 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
17 Hb_000937_010 0.1675216187 - - conserved hypothetical protein [Ricinus communis]
18 Hb_185274_030 0.1677317099 - - hypothetical protein JCGZ_15170 [Jatropha curcas]
19 Hb_007101_120 0.1681451213 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
20 Hb_107647_010 0.1692463921 - - PREDICTED: uncharacterized protein ycf39 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_400 Hb_000189_400 Hb_046615_030 Hb_046615_030 Hb_000189_400--Hb_046615_030 Hb_001338_130 Hb_001338_130 Hb_000189_400--Hb_001338_130 Hb_107373_010 Hb_107373_010 Hb_000189_400--Hb_107373_010 Hb_020805_050 Hb_020805_050 Hb_000189_400--Hb_020805_050 Hb_003921_010 Hb_003921_010 Hb_000189_400--Hb_003921_010 Hb_180985_010 Hb_180985_010 Hb_000189_400--Hb_180985_010 Hb_000047_100 Hb_000047_100 Hb_046615_030--Hb_000047_100 Hb_004837_230 Hb_004837_230 Hb_046615_030--Hb_004837_230 Hb_006665_020 Hb_006665_020 Hb_046615_030--Hb_006665_020 Hb_001433_080 Hb_001433_080 Hb_046615_030--Hb_001433_080 Hb_005605_010 Hb_005605_010 Hb_046615_030--Hb_005605_010 Hb_001338_130--Hb_107373_010 Hb_025325_010 Hb_025325_010 Hb_001338_130--Hb_025325_010 Hb_006901_020 Hb_006901_020 Hb_001338_130--Hb_006901_020 Hb_000227_180 Hb_000227_180 Hb_001338_130--Hb_000227_180 Hb_160045_010 Hb_160045_010 Hb_001338_130--Hb_160045_010 Hb_011930_060 Hb_011930_060 Hb_001338_130--Hb_011930_060 Hb_107373_010--Hb_025325_010 Hb_002609_140 Hb_002609_140 Hb_107373_010--Hb_002609_140 Hb_005649_060 Hb_005649_060 Hb_107373_010--Hb_005649_060 Hb_000115_020 Hb_000115_020 Hb_107373_010--Hb_000115_020 Hb_000307_150 Hb_000307_150 Hb_107373_010--Hb_000307_150 Hb_007101_120 Hb_007101_120 Hb_020805_050--Hb_007101_120 Hb_020805_050--Hb_004837_230 Hb_008484_080 Hb_008484_080 Hb_020805_050--Hb_008484_080 Hb_000625_080 Hb_000625_080 Hb_020805_050--Hb_000625_080 Hb_020805_050--Hb_006665_020 Hb_000191_090 Hb_000191_090 Hb_020805_050--Hb_000191_090 Hb_005245_110 Hb_005245_110 Hb_003921_010--Hb_005245_110 Hb_003921_010--Hb_005605_010 Hb_003921_010--Hb_004837_230 Hb_000003_490 Hb_000003_490 Hb_003921_010--Hb_000003_490 Hb_001823_010 Hb_001823_010 Hb_003921_010--Hb_001823_010 Hb_003921_010--Hb_000191_090 Hb_000188_010 Hb_000188_010 Hb_180985_010--Hb_000188_010 Hb_000482_160 Hb_000482_160 Hb_180985_010--Hb_000482_160 Hb_001864_050 Hb_001864_050 Hb_180985_010--Hb_001864_050 Hb_001916_110 Hb_001916_110 Hb_180985_010--Hb_001916_110 Hb_003921_020 Hb_003921_020 Hb_180985_010--Hb_003921_020 Hb_001287_020 Hb_001287_020 Hb_180985_010--Hb_001287_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1868 15.9874 369.921 18.967 4.28927 9.39557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.07398 486.21

CAGE analysis