Hb_006212_030

Information

Type -
Description -
Location Contig6212: 42682-45523
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa021229mg
description hypothetical protein
nr
ID XP_007213082.1
description hypothetical protein PRUPE_ppa021229mg [Prunus persica]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID M5WLY8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006212_030 0.0 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
2 Hb_003020_290 0.2825950959 - - hypothetical protein CICLE_v10029104mg [Citrus clementina]
3 Hb_000018_050 0.2854052426 - - PREDICTED: uncharacterized protein LOC104899363 [Beta vulgaris subsp. vulgaris]
4 Hb_012938_010 0.2878367489 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_005654_010 0.3151675241 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000545_120 0.316191796 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_000387_090 0.3174429233 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
8 Hb_000375_180 0.3211328797 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
9 Hb_007064_030 0.324483586 - - polyprotein [Citrus endogenous pararetrovirus]
10 Hb_126044_010 0.3245444452 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
11 Hb_133820_010 0.3290815549 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_001818_110 0.3303420982 - - -
13 Hb_003605_010 0.3314478011 - - -
14 Hb_112046_010 0.3316130632 - - PREDICTED: uncharacterized protein LOC105772042 [Gossypium raimondii]
15 Hb_000016_120 0.3405426091 - - PREDICTED: uncharacterized protein LOC104610208 [Nelumbo nucifera]
16 Hb_001233_040 0.3420742679 - - PREDICTED: uncharacterized protein LOC105775263 [Gossypium raimondii]
17 Hb_057207_010 0.3439683851 - - hypothetical protein F383_17010 [Gossypium arboreum]
18 Hb_131102_010 0.3475698591 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_008191_010 0.353107282 - - -
20 Hb_004656_080 0.3531463752 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_006212_030 Hb_006212_030 Hb_003020_290 Hb_003020_290 Hb_006212_030--Hb_003020_290 Hb_000018_050 Hb_000018_050 Hb_006212_030--Hb_000018_050 Hb_012938_010 Hb_012938_010 Hb_006212_030--Hb_012938_010 Hb_005654_010 Hb_005654_010 Hb_006212_030--Hb_005654_010 Hb_000545_120 Hb_000545_120 Hb_006212_030--Hb_000545_120 Hb_000387_090 Hb_000387_090 Hb_006212_030--Hb_000387_090 Hb_158235_010 Hb_158235_010 Hb_003020_290--Hb_158235_010 Hb_005496_100 Hb_005496_100 Hb_003020_290--Hb_005496_100 Hb_001519_020 Hb_001519_020 Hb_003020_290--Hb_001519_020 Hb_001344_030 Hb_001344_030 Hb_003020_290--Hb_001344_030 Hb_000757_090 Hb_000757_090 Hb_003020_290--Hb_000757_090 Hb_186054_010 Hb_186054_010 Hb_003020_290--Hb_186054_010 Hb_037790_010 Hb_037790_010 Hb_000018_050--Hb_037790_010 Hb_007904_010 Hb_007904_010 Hb_000018_050--Hb_007904_010 Hb_005822_030 Hb_005822_030 Hb_000018_050--Hb_005822_030 Hb_002374_130 Hb_002374_130 Hb_000018_050--Hb_002374_130 Hb_019617_010 Hb_019617_010 Hb_000018_050--Hb_019617_010 Hb_012938_010--Hb_005654_010 Hb_071130_040 Hb_071130_040 Hb_012938_010--Hb_071130_040 Hb_000375_180 Hb_000375_180 Hb_012938_010--Hb_000375_180 Hb_002811_340 Hb_002811_340 Hb_012938_010--Hb_002811_340 Hb_000016_120 Hb_000016_120 Hb_012938_010--Hb_000016_120 Hb_156924_020 Hb_156924_020 Hb_012938_010--Hb_156924_020 Hb_005654_010--Hb_000375_180 Hb_001335_050 Hb_001335_050 Hb_005654_010--Hb_001335_050 Hb_005654_010--Hb_071130_040 Hb_104721_010 Hb_104721_010 Hb_005654_010--Hb_104721_010 Hb_107221_010 Hb_107221_010 Hb_005654_010--Hb_107221_010 Hb_000545_120--Hb_000375_180 Hb_000545_120--Hb_012938_010 Hb_000545_120--Hb_000016_120 Hb_003124_210 Hb_003124_210 Hb_000545_120--Hb_003124_210 Hb_000545_120--Hb_005654_010 Hb_004289_040 Hb_004289_040 Hb_000545_120--Hb_004289_040 Hb_007479_030 Hb_007479_030 Hb_000387_090--Hb_007479_030 Hb_000445_200 Hb_000445_200 Hb_000387_090--Hb_000445_200 Hb_000387_090--Hb_001344_030 Hb_116020_010 Hb_116020_010 Hb_000387_090--Hb_116020_010 Hb_013253_030 Hb_013253_030 Hb_000387_090--Hb_013253_030 Hb_033152_040 Hb_033152_040 Hb_000387_090--Hb_033152_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.017922 0.00659803 0 0 0 0.0145454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0181735 0.0286007 0 0 0.0911367

CAGE analysis