Hb_001335_050

Information

Type -
Description -
Location Contig1335: 125595-127363
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001335_050 0.0 - - -
2 Hb_107221_010 0.1131196356 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_005654_010 0.2116970778 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_071130_040 0.2232982616 - - conserved hypothetical protein [Ricinus communis]
5 Hb_057207_010 0.2594781269 - - hypothetical protein F383_17010 [Gossypium arboreum]
6 Hb_000375_180 0.2619457158 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
7 Hb_007064_030 0.2902068061 - - polyprotein [Citrus endogenous pararetrovirus]
8 Hb_124621_010 0.290749999 - - hypothetical protein L484_019698 [Morus notabilis]
9 Hb_012938_010 0.3057401383 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_001901_030 0.3220373211 - - -
11 Hb_126044_010 0.3241028024 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
12 Hb_000331_520 0.3281608826 - - Esterase precursor, putative [Ricinus communis]
13 Hb_001366_070 0.337973727 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 4-like isoform X2 [Jatropha curcas]
14 Hb_104721_010 0.3384264711 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
15 Hb_007157_010 0.3406635038 - - -
16 Hb_004656_080 0.3428307579 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_011724_030 0.3433258023 - - Organic cation transporter, putative [Ricinus communis]
18 Hb_003938_070 0.3476985355 - - ring finger protein, putative [Ricinus communis]
19 Hb_018869_020 0.3508555762 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
20 Hb_156924_020 0.3525952782 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]

Gene co-expression network

sample Hb_001335_050 Hb_001335_050 Hb_107221_010 Hb_107221_010 Hb_001335_050--Hb_107221_010 Hb_005654_010 Hb_005654_010 Hb_001335_050--Hb_005654_010 Hb_071130_040 Hb_071130_040 Hb_001335_050--Hb_071130_040 Hb_057207_010 Hb_057207_010 Hb_001335_050--Hb_057207_010 Hb_000375_180 Hb_000375_180 Hb_001335_050--Hb_000375_180 Hb_007064_030 Hb_007064_030 Hb_001335_050--Hb_007064_030 Hb_107221_010--Hb_071130_040 Hb_124621_010 Hb_124621_010 Hb_107221_010--Hb_124621_010 Hb_107221_010--Hb_005654_010 Hb_107221_010--Hb_057207_010 Hb_178654_020 Hb_178654_020 Hb_107221_010--Hb_178654_020 Hb_005654_010--Hb_000375_180 Hb_012938_010 Hb_012938_010 Hb_005654_010--Hb_012938_010 Hb_005654_010--Hb_071130_040 Hb_104721_010 Hb_104721_010 Hb_005654_010--Hb_104721_010 Hb_071130_040--Hb_124621_010 Hb_071130_040--Hb_012938_010 Hb_004656_080 Hb_004656_080 Hb_071130_040--Hb_004656_080 Hb_126044_010 Hb_126044_010 Hb_057207_010--Hb_126044_010 Hb_057207_010--Hb_005654_010 Hb_057207_010--Hb_007064_030 Hb_001623_600 Hb_001623_600 Hb_057207_010--Hb_001623_600 Hb_000375_180--Hb_012938_010 Hb_000545_120 Hb_000545_120 Hb_000375_180--Hb_000545_120 Hb_000375_180--Hb_071130_040 Hb_003124_210 Hb_003124_210 Hb_000375_180--Hb_003124_210 Hb_007064_030--Hb_126044_010 Hb_007064_030--Hb_071130_040 Hb_007064_030--Hb_004656_080 Hb_003927_060 Hb_003927_060 Hb_007064_030--Hb_003927_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.046986 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0644913 0.101423 0 0.0205024 0.102139

CAGE analysis