Hb_000375_180

Information

Type -
Description -
Location Contig375: 218751-220301
Sequence    

Annotation

kegg
ID pmum:103321395
description uncharacterized LOC103321395
nr
ID XP_010251928.1
description PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A5BJ98
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000375_180 0.0 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
2 Hb_005654_010 0.148569825 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_012938_010 0.1983855353 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_000545_120 0.2271484699 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_071130_040 0.2527625579 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001335_050 0.2619457158 - - -
7 Hb_003124_210 0.282511235 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000016_120 0.2826372048 - - PREDICTED: uncharacterized protein LOC104610208 [Nelumbo nucifera]
9 Hb_107221_010 0.2884187589 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_003020_290 0.2953589837 - - hypothetical protein CICLE_v10029104mg [Citrus clementina]
11 Hb_186054_010 0.3009456295 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_161207_010 0.3048199672 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
13 Hb_104721_010 0.3067170727 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
14 Hb_000757_090 0.3099274322 - - SPla/RYanodine receptor domain-containing protein isoform 3 [Theobroma cacao]
15 Hb_004656_080 0.3102065129 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_156924_020 0.3142515921 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
17 Hb_003813_160 0.3143947352 - - -
18 Hb_124621_010 0.3180472949 - - hypothetical protein L484_019698 [Morus notabilis]
19 Hb_006212_030 0.3211328797 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
20 Hb_002811_340 0.3231848048 - - PREDICTED: ammonium transporter 3 member 2-like [Populus euphratica]

Gene co-expression network

sample Hb_000375_180 Hb_000375_180 Hb_005654_010 Hb_005654_010 Hb_000375_180--Hb_005654_010 Hb_012938_010 Hb_012938_010 Hb_000375_180--Hb_012938_010 Hb_000545_120 Hb_000545_120 Hb_000375_180--Hb_000545_120 Hb_071130_040 Hb_071130_040 Hb_000375_180--Hb_071130_040 Hb_001335_050 Hb_001335_050 Hb_000375_180--Hb_001335_050 Hb_003124_210 Hb_003124_210 Hb_000375_180--Hb_003124_210 Hb_005654_010--Hb_012938_010 Hb_005654_010--Hb_001335_050 Hb_005654_010--Hb_071130_040 Hb_104721_010 Hb_104721_010 Hb_005654_010--Hb_104721_010 Hb_107221_010 Hb_107221_010 Hb_005654_010--Hb_107221_010 Hb_012938_010--Hb_071130_040 Hb_002811_340 Hb_002811_340 Hb_012938_010--Hb_002811_340 Hb_000016_120 Hb_000016_120 Hb_012938_010--Hb_000016_120 Hb_156924_020 Hb_156924_020 Hb_012938_010--Hb_156924_020 Hb_000545_120--Hb_012938_010 Hb_000545_120--Hb_000016_120 Hb_000545_120--Hb_003124_210 Hb_000545_120--Hb_005654_010 Hb_004289_040 Hb_004289_040 Hb_000545_120--Hb_004289_040 Hb_124621_010 Hb_124621_010 Hb_071130_040--Hb_124621_010 Hb_004656_080 Hb_004656_080 Hb_071130_040--Hb_004656_080 Hb_071130_040--Hb_001335_050 Hb_071130_040--Hb_107221_010 Hb_001335_050--Hb_107221_010 Hb_057207_010 Hb_057207_010 Hb_001335_050--Hb_057207_010 Hb_007064_030 Hb_007064_030 Hb_001335_050--Hb_007064_030 Hb_003124_210--Hb_000016_120 Hb_003124_210--Hb_004289_040 Hb_001604_050 Hb_001604_050 Hb_003124_210--Hb_001604_050 Hb_049944_010 Hb_049944_010 Hb_003124_210--Hb_049944_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0372093 0 0 0.0209193 0.0247152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.102244 0.120621 0 0.0161718 0.246635

CAGE analysis