Hb_002811_340

Information

Type -
Description -
Location Contig2811: 276870-278628
Sequence    

Annotation

kegg
ID pop:POPTR_0013s03780g
description POPTRDRAFT_814325; hypothetical protein
nr
ID XP_011038582.1
description PREDICTED: ammonium transporter 3 member 2-like [Populus euphratica]
swissprot
ID Q84KJ6
description Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1
trembl
ID B9I8B8
description Ammonium transporter OS=Populus trichocarpa GN=POPTR_0013s03780g PE=3 SV=2
Gene Ontology
ID GO:0016020
description ammonium transporter 3 member 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_340 0.0 - - PREDICTED: ammonium transporter 3 member 2-like [Populus euphratica]
2 Hb_012218_020 0.1740445025 - - hypothetical protein JCGZ_14688 [Jatropha curcas]
3 Hb_012938_010 0.2209577006 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_000738_010 0.2563185126 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
5 Hb_178654_020 0.2890528111 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
6 Hb_094852_010 0.2901972503 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
7 Hb_156924_020 0.2916041226 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
8 Hb_000016_120 0.2925357999 - - PREDICTED: uncharacterized protein LOC104610208 [Nelumbo nucifera]
9 Hb_000757_090 0.3031625229 - - SPla/RYanodine receptor domain-containing protein isoform 3 [Theobroma cacao]
10 Hb_003124_210 0.3045925685 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004289_040 0.3148160984 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
12 Hb_002636_020 0.3230369933 - - -
13 Hb_000375_180 0.3231848048 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
14 Hb_187024_070 0.3263706791 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
15 Hb_005654_010 0.3264403326 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_000545_120 0.3302563996 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_005496_100 0.3332711471 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH85-like [Populus euphratica]
18 Hb_065858_010 0.3345399441 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
19 Hb_003020_290 0.3349092995 - - hypothetical protein CICLE_v10029104mg [Citrus clementina]
20 Hb_010997_020 0.3381891082 - - -

Gene co-expression network

sample Hb_002811_340 Hb_002811_340 Hb_012218_020 Hb_012218_020 Hb_002811_340--Hb_012218_020 Hb_012938_010 Hb_012938_010 Hb_002811_340--Hb_012938_010 Hb_000738_010 Hb_000738_010 Hb_002811_340--Hb_000738_010 Hb_178654_020 Hb_178654_020 Hb_002811_340--Hb_178654_020 Hb_094852_010 Hb_094852_010 Hb_002811_340--Hb_094852_010 Hb_156924_020 Hb_156924_020 Hb_002811_340--Hb_156924_020 Hb_033222_010 Hb_033222_010 Hb_012218_020--Hb_033222_010 Hb_005496_100 Hb_005496_100 Hb_012218_020--Hb_005496_100 Hb_012218_020--Hb_012938_010 Hb_000002_420 Hb_000002_420 Hb_012218_020--Hb_000002_420 Hb_000016_120 Hb_000016_120 Hb_012218_020--Hb_000016_120 Hb_005654_010 Hb_005654_010 Hb_012938_010--Hb_005654_010 Hb_071130_040 Hb_071130_040 Hb_012938_010--Hb_071130_040 Hb_000375_180 Hb_000375_180 Hb_012938_010--Hb_000375_180 Hb_012938_010--Hb_000016_120 Hb_012938_010--Hb_156924_020 Hb_187024_070 Hb_187024_070 Hb_000738_010--Hb_187024_070 Hb_012324_020 Hb_012324_020 Hb_000738_010--Hb_012324_020 Hb_094721_010 Hb_094721_010 Hb_000738_010--Hb_094721_010 Hb_000003_770 Hb_000003_770 Hb_000738_010--Hb_000003_770 Hb_002636_020 Hb_002636_020 Hb_000738_010--Hb_002636_020 Hb_001379_130 Hb_001379_130 Hb_000738_010--Hb_001379_130 Hb_178654_020--Hb_094852_010 Hb_178654_020--Hb_156924_020 Hb_000757_090 Hb_000757_090 Hb_178654_020--Hb_000757_090 Hb_065858_010 Hb_065858_010 Hb_178654_020--Hb_065858_010 Hb_124621_010 Hb_124621_010 Hb_178654_020--Hb_124621_010 Hb_178654_020--Hb_012938_010 Hb_094852_010--Hb_156924_020 Hb_094852_010--Hb_000757_090 Hb_094852_010--Hb_065858_010 Hb_094852_010--Hb_124621_010 Hb_001344_030 Hb_001344_030 Hb_094852_010--Hb_001344_030 Hb_156924_020--Hb_000757_090 Hb_156924_020--Hb_001344_030 Hb_186054_010 Hb_186054_010 Hb_156924_020--Hb_186054_010 Hb_156924_020--Hb_065858_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0510158
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0994094 0.0782058 0 0 0.108832

CAGE analysis