Hb_033222_010

Information

Type -
Description -
Location Contig33222: 13-1164
Sequence    

Annotation

kegg
ID tcc:TCM_043384
description DNA/RNA polymerases superfamily protein
nr
ID XP_011093358.1
description PREDICTED: uncharacterized protein LOC105173350 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID A0A061FNI4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_043384 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033222_010 0.0 - - PREDICTED: uncharacterized protein LOC105173350 [Sesamum indicum]
2 Hb_000227_050 0.2136457421 - - -
3 Hb_012218_020 0.2552358989 - - hypothetical protein JCGZ_14688 [Jatropha curcas]
4 Hb_000028_210 0.2596954255 - - hypothetical protein CISIN_1g0103302mg, partial [Citrus sinensis]
5 Hb_000002_420 0.2701192258 - - PREDICTED: serine/threonine-protein kinase BLUS1-like [Citrus sinensis]
6 Hb_001723_050 0.2940464405 - - galactinol synthase-2 [Manihot esculenta]
7 Hb_000160_160 0.3164034957 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
8 Hb_010565_040 0.326621731 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]
9 Hb_002636_150 0.333728275 - - -
10 Hb_002200_050 0.3413792494 - - unknown [Lotus japonicus]
11 Hb_000181_150 0.3500302217 - - hypothetical protein PHAVU_011G1647000g, partial [Phaseolus vulgaris]
12 Hb_007108_020 0.3553612207 - - -
13 Hb_007124_010 0.3566237947 - - unnamed protein product [Coffea canephora]
14 Hb_025190_010 0.3568754671 - - conserved hypothetical protein [Ricinus communis]
15 Hb_168737_010 0.35802806 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000810_020 0.3587241582 - - -
17 Hb_000066_160 0.3591098869 - - -
18 Hb_003081_030 0.3601992841 - - PREDICTED: uncharacterized protein LOC101256381 [Solanum lycopersicum]
19 Hb_013818_050 0.3603269137 - - PREDICTED: uncharacterized protein LOC105629143 isoform X2 [Jatropha curcas]
20 Hb_002205_060 0.3605461418 - - -

Gene co-expression network

sample Hb_033222_010 Hb_033222_010 Hb_000227_050 Hb_000227_050 Hb_033222_010--Hb_000227_050 Hb_012218_020 Hb_012218_020 Hb_033222_010--Hb_012218_020 Hb_000028_210 Hb_000028_210 Hb_033222_010--Hb_000028_210 Hb_000002_420 Hb_000002_420 Hb_033222_010--Hb_000002_420 Hb_001723_050 Hb_001723_050 Hb_033222_010--Hb_001723_050 Hb_000160_160 Hb_000160_160 Hb_033222_010--Hb_000160_160 Hb_000066_160 Hb_000066_160 Hb_000227_050--Hb_000066_160 Hb_002636_150 Hb_002636_150 Hb_000227_050--Hb_002636_150 Hb_002200_050 Hb_002200_050 Hb_000227_050--Hb_002200_050 Hb_000227_050--Hb_000160_160 Hb_000227_050--Hb_000028_210 Hb_002811_340 Hb_002811_340 Hb_012218_020--Hb_002811_340 Hb_005496_100 Hb_005496_100 Hb_012218_020--Hb_005496_100 Hb_012938_010 Hb_012938_010 Hb_012218_020--Hb_012938_010 Hb_012218_020--Hb_000002_420 Hb_000016_120 Hb_000016_120 Hb_012218_020--Hb_000016_120 Hb_002783_060 Hb_002783_060 Hb_000028_210--Hb_002783_060 Hb_000810_020 Hb_000810_020 Hb_000028_210--Hb_000810_020 Hb_007763_050 Hb_007763_050 Hb_000028_210--Hb_007763_050 Hb_007124_010 Hb_007124_010 Hb_000028_210--Hb_007124_010 Hb_177103_010 Hb_177103_010 Hb_000028_210--Hb_177103_010 Hb_000161_120 Hb_000161_120 Hb_000028_210--Hb_000161_120 Hb_001733_060 Hb_001733_060 Hb_000002_420--Hb_001733_060 Hb_007765_120 Hb_007765_120 Hb_000002_420--Hb_007765_120 Hb_000184_100 Hb_000184_100 Hb_000002_420--Hb_000184_100 Hb_137461_010 Hb_137461_010 Hb_000002_420--Hb_137461_010 Hb_003964_090 Hb_003964_090 Hb_000002_420--Hb_003964_090 Hb_001377_440 Hb_001377_440 Hb_001723_050--Hb_001377_440 Hb_001969_050 Hb_001969_050 Hb_001723_050--Hb_001969_050 Hb_006995_020 Hb_006995_020 Hb_001723_050--Hb_006995_020 Hb_018591_040 Hb_018591_040 Hb_001723_050--Hb_018591_040 Hb_007044_280 Hb_007044_280 Hb_001723_050--Hb_007044_280 Hb_000160_160--Hb_002200_050 Hb_000656_090 Hb_000656_090 Hb_000160_160--Hb_000656_090 Hb_012627_020 Hb_012627_020 Hb_000160_160--Hb_012627_020 Hb_008447_030 Hb_008447_030 Hb_000160_160--Hb_008447_030 Hb_000329_560 Hb_000329_560 Hb_000160_160--Hb_000329_560 Hb_025190_010 Hb_025190_010 Hb_000160_160--Hb_025190_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0184309 0 0.188792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0985298 0.0387475 0 0.0155737 0.0793954

CAGE analysis