Hb_012938_010

Information

Type -
Description -
Location Contig12938: 7630-11093
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012938_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_005654_010 0.1888525816 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_071130_040 0.1909013577 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000375_180 0.1983855353 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
5 Hb_002811_340 0.2209577006 - - PREDICTED: ammonium transporter 3 member 2-like [Populus euphratica]
6 Hb_000016_120 0.2259913292 - - PREDICTED: uncharacterized protein LOC104610208 [Nelumbo nucifera]
7 Hb_156924_020 0.2285870989 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
8 Hb_124621_010 0.2292770523 - - hypothetical protein L484_019698 [Morus notabilis]
9 Hb_000757_090 0.2292780714 - - SPla/RYanodine receptor domain-containing protein isoform 3 [Theobroma cacao]
10 Hb_000545_120 0.2400789173 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_094852_010 0.2472264513 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
12 Hb_001344_030 0.2686365531 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_178654_020 0.2713770786 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
14 Hb_003020_290 0.2818254324 - - hypothetical protein CICLE_v10029104mg [Citrus clementina]
15 Hb_006212_030 0.2878367489 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
16 Hb_186054_010 0.2921274592 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_004656_080 0.2952877321 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_008191_010 0.2961225189 - - -
19 Hb_107221_010 0.2981937183 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_012218_020 0.3046983401 - - hypothetical protein JCGZ_14688 [Jatropha curcas]

Gene co-expression network

sample Hb_012938_010 Hb_012938_010 Hb_005654_010 Hb_005654_010 Hb_012938_010--Hb_005654_010 Hb_071130_040 Hb_071130_040 Hb_012938_010--Hb_071130_040 Hb_000375_180 Hb_000375_180 Hb_012938_010--Hb_000375_180 Hb_002811_340 Hb_002811_340 Hb_012938_010--Hb_002811_340 Hb_000016_120 Hb_000016_120 Hb_012938_010--Hb_000016_120 Hb_156924_020 Hb_156924_020 Hb_012938_010--Hb_156924_020 Hb_005654_010--Hb_000375_180 Hb_001335_050 Hb_001335_050 Hb_005654_010--Hb_001335_050 Hb_005654_010--Hb_071130_040 Hb_104721_010 Hb_104721_010 Hb_005654_010--Hb_104721_010 Hb_107221_010 Hb_107221_010 Hb_005654_010--Hb_107221_010 Hb_124621_010 Hb_124621_010 Hb_071130_040--Hb_124621_010 Hb_004656_080 Hb_004656_080 Hb_071130_040--Hb_004656_080 Hb_071130_040--Hb_001335_050 Hb_071130_040--Hb_107221_010 Hb_000545_120 Hb_000545_120 Hb_000375_180--Hb_000545_120 Hb_000375_180--Hb_071130_040 Hb_000375_180--Hb_001335_050 Hb_003124_210 Hb_003124_210 Hb_000375_180--Hb_003124_210 Hb_012218_020 Hb_012218_020 Hb_002811_340--Hb_012218_020 Hb_000738_010 Hb_000738_010 Hb_002811_340--Hb_000738_010 Hb_178654_020 Hb_178654_020 Hb_002811_340--Hb_178654_020 Hb_094852_010 Hb_094852_010 Hb_002811_340--Hb_094852_010 Hb_002811_340--Hb_156924_020 Hb_000016_120--Hb_003124_210 Hb_000016_120--Hb_000545_120 Hb_000016_120--Hb_000375_180 Hb_000016_120--Hb_005654_010 Hb_008191_010 Hb_008191_010 Hb_000016_120--Hb_008191_010 Hb_000757_090 Hb_000757_090 Hb_156924_020--Hb_000757_090 Hb_156924_020--Hb_094852_010 Hb_156924_020--Hb_178654_020 Hb_001344_030 Hb_001344_030 Hb_156924_020--Hb_001344_030 Hb_186054_010 Hb_186054_010 Hb_156924_020--Hb_186054_010 Hb_065858_010 Hb_065858_010 Hb_156924_020--Hb_065858_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00529737 0 0 0 0.00596859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0291895 0.0229699 0 0 0.0490034

CAGE analysis