Hb_178654_020

Information

Type -
Description -
Location Contig178654: 379-1526
Sequence    

Annotation

kegg
ID tcc:TCM_046323
description Gag protease polyprotein
nr
ID XP_012077902.1
description PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID M1DF56
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178654_020 0.0 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
2 Hb_094852_010 0.1015009723 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
3 Hb_156924_020 0.1351584649 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
4 Hb_000757_090 0.1749086834 - - SPla/RYanodine receptor domain-containing protein isoform 3 [Theobroma cacao]
5 Hb_065858_010 0.1773538594 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
6 Hb_124621_010 0.2330343708 - - hypothetical protein L484_019698 [Morus notabilis]
7 Hb_012938_010 0.2713770786 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_071130_040 0.2820527777 - - conserved hypothetical protein [Ricinus communis]
9 Hb_107221_010 0.2880900869 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_002811_340 0.2890528111 - - PREDICTED: ammonium transporter 3 member 2-like [Populus euphratica]
11 Hb_001344_030 0.2945793034 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_007157_010 0.3146020024 - - -
13 Hb_186054_010 0.3157718264 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_014440_010 0.3257917366 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
15 Hb_001519_020 0.3292210629 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
16 Hb_000449_060 0.3342090767 - - -
17 Hb_005615_060 0.340527621 - - PREDICTED: uncharacterized protein LOC105636752 [Jatropha curcas]
18 Hb_000738_010 0.3436270074 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
19 Hb_187024_070 0.3441507285 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
20 Hb_005654_010 0.34904063 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_178654_020 Hb_178654_020 Hb_094852_010 Hb_094852_010 Hb_178654_020--Hb_094852_010 Hb_156924_020 Hb_156924_020 Hb_178654_020--Hb_156924_020 Hb_000757_090 Hb_000757_090 Hb_178654_020--Hb_000757_090 Hb_065858_010 Hb_065858_010 Hb_178654_020--Hb_065858_010 Hb_124621_010 Hb_124621_010 Hb_178654_020--Hb_124621_010 Hb_012938_010 Hb_012938_010 Hb_178654_020--Hb_012938_010 Hb_094852_010--Hb_156924_020 Hb_094852_010--Hb_000757_090 Hb_094852_010--Hb_065858_010 Hb_094852_010--Hb_124621_010 Hb_001344_030 Hb_001344_030 Hb_094852_010--Hb_001344_030 Hb_156924_020--Hb_000757_090 Hb_156924_020--Hb_001344_030 Hb_186054_010 Hb_186054_010 Hb_156924_020--Hb_186054_010 Hb_156924_020--Hb_065858_010 Hb_000757_090--Hb_001344_030 Hb_000757_090--Hb_186054_010 Hb_000757_090--Hb_012938_010 Hb_065858_010--Hb_124621_010 Hb_005615_060 Hb_005615_060 Hb_065858_010--Hb_005615_060 Hb_065858_010--Hb_000757_090 Hb_071130_040 Hb_071130_040 Hb_124621_010--Hb_071130_040 Hb_124621_010--Hb_012938_010 Hb_031474_030 Hb_031474_030 Hb_124621_010--Hb_031474_030 Hb_005654_010 Hb_005654_010 Hb_012938_010--Hb_005654_010 Hb_012938_010--Hb_071130_040 Hb_000375_180 Hb_000375_180 Hb_012938_010--Hb_000375_180 Hb_002811_340 Hb_002811_340 Hb_012938_010--Hb_002811_340 Hb_000016_120 Hb_000016_120 Hb_012938_010--Hb_000016_120 Hb_012938_010--Hb_156924_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0981733 0.0772148 0 0 0.0791244

CAGE analysis