Hb_000016_120

Information

Type -
Description -
Location Contig16: 165172-166911
Sequence    

Annotation

kegg
ID pop:POPTR_0229s00250g
description hypothetical protein
nr
ID XP_010275023.1
description PREDICTED: uncharacterized protein LOC104610208 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID U7E091
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0229s00250g PE=4 SV=1
Gene Ontology
ID GO:0046872
description low quality protein: s-type anion channel slah3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_120 0.0 - - PREDICTED: uncharacterized protein LOC104610208 [Nelumbo nucifera]
2 Hb_012938_010 0.2259913292 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_003124_210 0.2284935846 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000545_120 0.2459563183 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_000375_180 0.2826372048 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
6 Hb_005654_010 0.2872113418 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_008191_010 0.2904573094 - - -
8 Hb_002811_340 0.2925357999 - - PREDICTED: ammonium transporter 3 member 2-like [Populus euphratica]
9 Hb_071130_040 0.3015130433 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001733_060 0.3209004856 - - PREDICTED: uncharacterized protein LOC104431099 [Eucalyptus grandis]
11 Hb_012218_020 0.3226285705 - - hypothetical protein JCGZ_14688 [Jatropha curcas]
12 Hb_005714_030 0.3331600726 - - PREDICTED: COBRA-like protein 6 isoform X1 [Gossypium raimondii]
13 Hb_006212_030 0.3405426091 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
14 Hb_112046_010 0.3411878524 - - PREDICTED: uncharacterized protein LOC105772042 [Gossypium raimondii]
15 Hb_000002_420 0.3419317465 - - PREDICTED: serine/threonine-protein kinase BLUS1-like [Citrus sinensis]
16 Hb_124621_010 0.3419451944 - - hypothetical protein L484_019698 [Morus notabilis]
17 Hb_007064_030 0.3524837668 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_001335_050 0.3548434835 - - -
19 Hb_002996_020 0.3609764443 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_004656_080 0.3624264203 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000016_120 Hb_000016_120 Hb_012938_010 Hb_012938_010 Hb_000016_120--Hb_012938_010 Hb_003124_210 Hb_003124_210 Hb_000016_120--Hb_003124_210 Hb_000545_120 Hb_000545_120 Hb_000016_120--Hb_000545_120 Hb_000375_180 Hb_000375_180 Hb_000016_120--Hb_000375_180 Hb_005654_010 Hb_005654_010 Hb_000016_120--Hb_005654_010 Hb_008191_010 Hb_008191_010 Hb_000016_120--Hb_008191_010 Hb_012938_010--Hb_005654_010 Hb_071130_040 Hb_071130_040 Hb_012938_010--Hb_071130_040 Hb_012938_010--Hb_000375_180 Hb_002811_340 Hb_002811_340 Hb_012938_010--Hb_002811_340 Hb_156924_020 Hb_156924_020 Hb_012938_010--Hb_156924_020 Hb_004289_040 Hb_004289_040 Hb_003124_210--Hb_004289_040 Hb_003124_210--Hb_000545_120 Hb_003124_210--Hb_000375_180 Hb_001604_050 Hb_001604_050 Hb_003124_210--Hb_001604_050 Hb_049944_010 Hb_049944_010 Hb_003124_210--Hb_049944_010 Hb_000545_120--Hb_000375_180 Hb_000545_120--Hb_012938_010 Hb_000545_120--Hb_005654_010 Hb_000545_120--Hb_004289_040 Hb_000375_180--Hb_005654_010 Hb_000375_180--Hb_071130_040 Hb_001335_050 Hb_001335_050 Hb_000375_180--Hb_001335_050 Hb_005654_010--Hb_001335_050 Hb_005654_010--Hb_071130_040 Hb_104721_010 Hb_104721_010 Hb_005654_010--Hb_104721_010 Hb_107221_010 Hb_107221_010 Hb_005654_010--Hb_107221_010 Hb_005496_100 Hb_005496_100 Hb_008191_010--Hb_005496_100 Hb_002874_140 Hb_002874_140 Hb_008191_010--Hb_002874_140 Hb_161207_010 Hb_161207_010 Hb_008191_010--Hb_161207_010 Hb_112046_010 Hb_112046_010 Hb_008191_010--Hb_112046_010 Hb_008191_010--Hb_012938_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0649943 0 0 0 0.068383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0890484 0.0699961 0 0 0.137211

CAGE analysis