Hb_112046_010

Information

Type -
Description -
Location Contig112046: 822-1700
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012448844.1
description PREDICTED: uncharacterized protein LOC105772042 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A067L4H3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03682 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_112046_010 0.0 - - PREDICTED: uncharacterized protein LOC105772042 [Gossypium raimondii]
2 Hb_000162_120 0.2312268322 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
3 Hb_122273_010 0.248515981 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_001490_030 0.2698938477 - - PREDICTED: psbP domain-containing protein 6, chloroplastic [Jatropha curcas]
5 Hb_000627_260 0.2733967641 - - chloride channel clc, putative [Ricinus communis]
6 Hb_016567_010 0.2754515185 - - -
7 Hb_030131_010 0.2764263446 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal, partial [Jatropha curcas]
8 Hb_001277_230 0.2891889152 - - -
9 Hb_008191_010 0.292666055 - - -
10 Hb_000347_330 0.2940150276 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
11 Hb_000191_080 0.3037336864 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
12 Hb_000661_080 0.3053242463 - - monoxygenase, putative [Ricinus communis]
13 Hb_003497_040 0.3077811001 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000003_360 0.3106027832 - - Putative inactive purple acid phosphatase 27 [Glycine soja]
15 Hb_001411_040 0.3116026869 - - hypothetical protein VITISV_010644 [Vitis vinifera]
16 Hb_000258_140 0.313223005 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003813_020 0.3140993906 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
18 Hb_001435_020 0.3162365655 - - hypothetical protein JCGZ_22466 [Jatropha curcas]
19 Hb_001401_080 0.3181264866 - - PREDICTED: protein TIC 22, chloroplastic [Jatropha curcas]
20 Hb_001790_030 0.3186364228 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_112046_010 Hb_112046_010 Hb_000162_120 Hb_000162_120 Hb_112046_010--Hb_000162_120 Hb_122273_010 Hb_122273_010 Hb_112046_010--Hb_122273_010 Hb_001490_030 Hb_001490_030 Hb_112046_010--Hb_001490_030 Hb_000627_260 Hb_000627_260 Hb_112046_010--Hb_000627_260 Hb_016567_010 Hb_016567_010 Hb_112046_010--Hb_016567_010 Hb_030131_010 Hb_030131_010 Hb_112046_010--Hb_030131_010 Hb_000162_120--Hb_000627_260 Hb_000191_080 Hb_000191_080 Hb_000162_120--Hb_000191_080 Hb_009767_130 Hb_009767_130 Hb_000162_120--Hb_009767_130 Hb_003813_020 Hb_003813_020 Hb_000162_120--Hb_003813_020 Hb_001898_180 Hb_001898_180 Hb_000162_120--Hb_001898_180 Hb_019040_030 Hb_019040_030 Hb_000162_120--Hb_019040_030 Hb_000094_340 Hb_000094_340 Hb_122273_010--Hb_000094_340 Hb_002701_110 Hb_002701_110 Hb_122273_010--Hb_002701_110 Hb_001196_040 Hb_001196_040 Hb_122273_010--Hb_001196_040 Hb_122273_010--Hb_016567_010 Hb_001277_230 Hb_001277_230 Hb_122273_010--Hb_001277_230 Hb_001490_030--Hb_003813_020 Hb_000622_240 Hb_000622_240 Hb_001490_030--Hb_000622_240 Hb_001712_020 Hb_001712_020 Hb_001490_030--Hb_001712_020 Hb_000107_570 Hb_000107_570 Hb_001490_030--Hb_000107_570 Hb_004241_020 Hb_004241_020 Hb_001490_030--Hb_004241_020 Hb_000156_210 Hb_000156_210 Hb_001490_030--Hb_000156_210 Hb_001769_170 Hb_001769_170 Hb_000627_260--Hb_001769_170 Hb_000627_260--Hb_009767_130 Hb_003994_160 Hb_003994_160 Hb_000627_260--Hb_003994_160 Hb_000796_160 Hb_000796_160 Hb_000627_260--Hb_000796_160 Hb_000172_440 Hb_000172_440 Hb_000627_260--Hb_000172_440 Hb_157023_020 Hb_157023_020 Hb_000627_260--Hb_157023_020 Hb_003497_040 Hb_003497_040 Hb_016567_010--Hb_003497_040 Hb_001056_030 Hb_001056_030 Hb_016567_010--Hb_001056_030 Hb_001401_080 Hb_001401_080 Hb_016567_010--Hb_001401_080 Hb_000008_360 Hb_000008_360 Hb_016567_010--Hb_000008_360 Hb_000105_050 Hb_000105_050 Hb_016567_010--Hb_000105_050 Hb_029866_120 Hb_029866_120 Hb_016567_010--Hb_029866_120 Hb_006452_230 Hb_006452_230 Hb_030131_010--Hb_006452_230 Hb_000331_520 Hb_000331_520 Hb_030131_010--Hb_000331_520 Hb_000175_260 Hb_000175_260 Hb_030131_010--Hb_000175_260 Hb_009710_030 Hb_009710_030 Hb_030131_010--Hb_009710_030 Hb_000254_140 Hb_000254_140 Hb_030131_010--Hb_000254_140 Hb_000258_140 Hb_000258_140 Hb_030131_010--Hb_000258_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.027287 0.0275026 0.0217253 0.0247797 0 0.0482057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0627024 0.0986127 0 0 0.0995075

CAGE analysis