Hb_002701_110

Information

Type transcription factor
Description TF Family: MIKC
Location Contig2701: 99645-105722
Sequence    

Annotation

kegg
ID tcc:TCM_018979
description K-box region and MADS-box transcription factor family protein
nr
ID XP_012088064.1
description PREDICTED: developmental protein SEPALLATA 1-like [Jatropha curcas]
swissprot
ID P29384
description Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1
trembl
ID A0A067JK97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25593 PE=4 SV=1
Gene Ontology
ID GO:0005634
description developmental protein sepallata 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28325: 99487-100592 , PASA_asmbl_28326: 101346-101852 , PASA_asmbl_28327: 105538-105635
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_110 0.0 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1-like [Jatropha curcas]
2 Hb_002997_070 0.1994030606 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
3 Hb_010578_030 0.2101792064 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
4 Hb_004680_080 0.2269244488 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
5 Hb_007313_110 0.2347430453 - - phosphoprotein phosphatase, putative [Ricinus communis]
6 Hb_000723_350 0.2412724111 - - protein binding protein, putative [Ricinus communis]
7 Hb_122273_010 0.2428602491 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_000144_060 0.2443604999 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_011310_140 0.2446081141 - - hypothetical protein JCGZ_07173 [Jatropha curcas]
10 Hb_002471_110 0.2459877263 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
11 Hb_002027_410 0.2467305426 - - PREDICTED: protease Do-like 2, chloroplastic [Jatropha curcas]
12 Hb_000260_430 0.2497489669 - - ribosomal protein L17, putative [Ricinus communis]
13 Hb_002701_120 0.2530514195 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]
14 Hb_000920_030 0.255230446 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
15 Hb_005725_260 0.2563695387 - - squalene monooxygenase [Jatropha curcas]
16 Hb_006787_090 0.2597401005 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
17 Hb_006062_030 0.2609412387 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
18 Hb_001541_100 0.2612519103 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
19 Hb_000976_190 0.2615172362 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
20 Hb_006637_080 0.2622858698 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002701_110 Hb_002701_110 Hb_002997_070 Hb_002997_070 Hb_002701_110--Hb_002997_070 Hb_010578_030 Hb_010578_030 Hb_002701_110--Hb_010578_030 Hb_004680_080 Hb_004680_080 Hb_002701_110--Hb_004680_080 Hb_007313_110 Hb_007313_110 Hb_002701_110--Hb_007313_110 Hb_000723_350 Hb_000723_350 Hb_002701_110--Hb_000723_350 Hb_122273_010 Hb_122273_010 Hb_002701_110--Hb_122273_010 Hb_011310_140 Hb_011310_140 Hb_002997_070--Hb_011310_140 Hb_006787_090 Hb_006787_090 Hb_002997_070--Hb_006787_090 Hb_000144_060 Hb_000144_060 Hb_002997_070--Hb_000144_060 Hb_000976_190 Hb_000976_190 Hb_002997_070--Hb_000976_190 Hb_003752_070 Hb_003752_070 Hb_002997_070--Hb_003752_070 Hb_021650_010 Hb_021650_010 Hb_002997_070--Hb_021650_010 Hb_086122_010 Hb_086122_010 Hb_010578_030--Hb_086122_010 Hb_031139_010 Hb_031139_010 Hb_010578_030--Hb_031139_010 Hb_000358_040 Hb_000358_040 Hb_010578_030--Hb_000358_040 Hb_000112_060 Hb_000112_060 Hb_010578_030--Hb_000112_060 Hb_000402_020 Hb_000402_020 Hb_010578_030--Hb_000402_020 Hb_000059_270 Hb_000059_270 Hb_010578_030--Hb_000059_270 Hb_006132_070 Hb_006132_070 Hb_004680_080--Hb_006132_070 Hb_008062_040 Hb_008062_040 Hb_004680_080--Hb_008062_040 Hb_001085_050 Hb_001085_050 Hb_004680_080--Hb_001085_050 Hb_000005_180 Hb_000005_180 Hb_004680_080--Hb_000005_180 Hb_002836_120 Hb_002836_120 Hb_004680_080--Hb_002836_120 Hb_000575_030 Hb_000575_030 Hb_004680_080--Hb_000575_030 Hb_007313_100 Hb_007313_100 Hb_007313_110--Hb_007313_100 Hb_000331_130 Hb_000331_130 Hb_007313_110--Hb_000331_130 Hb_031284_070 Hb_031284_070 Hb_007313_110--Hb_031284_070 Hb_007035_040 Hb_007035_040 Hb_007313_110--Hb_007035_040 Hb_003124_100 Hb_003124_100 Hb_007313_110--Hb_003124_100 Hb_080952_050 Hb_080952_050 Hb_007313_110--Hb_080952_050 Hb_000260_430 Hb_000260_430 Hb_000723_350--Hb_000260_430 Hb_000723_350--Hb_006787_090 Hb_002915_010 Hb_002915_010 Hb_000723_350--Hb_002915_010 Hb_000284_130 Hb_000284_130 Hb_000723_350--Hb_000284_130 Hb_163950_070 Hb_163950_070 Hb_000723_350--Hb_163950_070 Hb_007451_040 Hb_007451_040 Hb_000723_350--Hb_007451_040 Hb_000094_340 Hb_000094_340 Hb_122273_010--Hb_000094_340 Hb_112046_010 Hb_112046_010 Hb_122273_010--Hb_112046_010 Hb_001196_040 Hb_001196_040 Hb_122273_010--Hb_001196_040 Hb_016567_010 Hb_016567_010 Hb_122273_010--Hb_016567_010 Hb_001277_230 Hb_001277_230 Hb_122273_010--Hb_001277_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.30379 0.305758 1.33134 0.373021 0.165702 0.549593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.836718 0.179407 0 0.097145 2.14034

CAGE analysis