Hb_000723_350

Information

Type -
Description -
Location Contig723: 341641-344726
Sequence    

Annotation

kegg
ID rcu:RCOM_1355770
description protein binding protein, putative
nr
ID XP_002519530.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9LYW0
description BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1
trembl
ID B9S0L1
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1355770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55789: 342025-342620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_350 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_000260_430 0.1320951647 - - ribosomal protein L17, putative [Ricinus communis]
3 Hb_006787_090 0.1345827546 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
4 Hb_002915_010 0.1383660479 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
5 Hb_000284_130 0.1383674092 - - sodium-bile acid cotransporter, putative [Ricinus communis]
6 Hb_163950_070 0.1395054492 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
7 Hb_007451_040 0.1417040314 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
8 Hb_001541_110 0.1447825324 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_012545_060 0.1459412813 - - PREDICTED: uncharacterized protein LOC103986927 [Musa acuminata subsp. malaccensis]
10 Hb_000311_120 0.1517967131 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
11 Hb_029695_070 0.1524479857 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
12 Hb_004586_430 0.1534742064 - - PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
13 Hb_003883_010 0.1541999901 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
14 Hb_000120_990 0.1560030403 - - PREDICTED: MATE efflux family protein 3, chloroplastic-like [Jatropha curcas]
15 Hb_000085_190 0.1563309367 - - FtsZ1 protein [Manihot esculenta]
16 Hb_001863_120 0.1574274832 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
17 Hb_000181_060 0.1592440612 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
18 Hb_012779_080 0.1594117383 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
19 Hb_003728_100 0.1604583784 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
20 Hb_004994_080 0.1606040922 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000723_350 Hb_000723_350 Hb_000260_430 Hb_000260_430 Hb_000723_350--Hb_000260_430 Hb_006787_090 Hb_006787_090 Hb_000723_350--Hb_006787_090 Hb_002915_010 Hb_002915_010 Hb_000723_350--Hb_002915_010 Hb_000284_130 Hb_000284_130 Hb_000723_350--Hb_000284_130 Hb_163950_070 Hb_163950_070 Hb_000723_350--Hb_163950_070 Hb_007451_040 Hb_007451_040 Hb_000723_350--Hb_007451_040 Hb_000260_430--Hb_007451_040 Hb_011310_140 Hb_011310_140 Hb_000260_430--Hb_011310_140 Hb_000260_430--Hb_006787_090 Hb_000976_190 Hb_000976_190 Hb_000260_430--Hb_000976_190 Hb_000311_120 Hb_000311_120 Hb_000260_430--Hb_000311_120 Hb_006787_090--Hb_000311_120 Hb_010174_090 Hb_010174_090 Hb_006787_090--Hb_010174_090 Hb_003752_070 Hb_003752_070 Hb_006787_090--Hb_003752_070 Hb_006787_090--Hb_000284_130 Hb_000613_120 Hb_000613_120 Hb_006787_090--Hb_000613_120 Hb_000144_060 Hb_000144_060 Hb_006787_090--Hb_000144_060 Hb_012779_080 Hb_012779_080 Hb_002915_010--Hb_012779_080 Hb_003883_010 Hb_003883_010 Hb_002915_010--Hb_003883_010 Hb_000320_190 Hb_000320_190 Hb_002915_010--Hb_000320_190 Hb_002107_050 Hb_002107_050 Hb_002915_010--Hb_002107_050 Hb_000094_100 Hb_000094_100 Hb_002915_010--Hb_000094_100 Hb_000680_010 Hb_000680_010 Hb_002915_010--Hb_000680_010 Hb_021732_010 Hb_021732_010 Hb_000284_130--Hb_021732_010 Hb_004994_080 Hb_004994_080 Hb_000284_130--Hb_004994_080 Hb_000181_060 Hb_000181_060 Hb_000284_130--Hb_000181_060 Hb_000364_100 Hb_000364_100 Hb_000284_130--Hb_000364_100 Hb_000284_130--Hb_003752_070 Hb_000608_390 Hb_000608_390 Hb_163950_070--Hb_000608_390 Hb_002986_090 Hb_002986_090 Hb_163950_070--Hb_002986_090 Hb_006198_130 Hb_006198_130 Hb_163950_070--Hb_006198_130 Hb_163950_070--Hb_006787_090 Hb_002044_020 Hb_002044_020 Hb_163950_070--Hb_002044_020 Hb_009288_040 Hb_009288_040 Hb_163950_070--Hb_009288_040 Hb_007263_010 Hb_007263_010 Hb_007451_040--Hb_007263_010 Hb_001541_110 Hb_001541_110 Hb_007451_040--Hb_001541_110 Hb_007451_040--Hb_004994_080 Hb_000140_440 Hb_000140_440 Hb_007451_040--Hb_000140_440 Hb_006555_040 Hb_006555_040 Hb_007451_040--Hb_006555_040 Hb_005162_110 Hb_005162_110 Hb_007451_040--Hb_005162_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.45488 0.441174 2.60613 0.876467 0.393628 0.267833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.695865 0.651715 0.293269 0.520656 2.12223

CAGE analysis